View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_low_36 (Length: 234)
Name: NF21408_low_36
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 39825070 - 39824872
Alignment:
| Q |
15 |
cacagacacatagtgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccac |
114 |
Q |
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| T |
39825070 |
cacagacacatagtgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaggtactgacagtggggctccac |
39824971 |
T |
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| Q |
115 |
ctccaatatagaatgactacaacatataaacaagccatattaatttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatg |
213 |
Q |
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| T |
39824970 |
ctccaatatagaaagactacaacatataaacaagctatattaatttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatg |
39824872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 39805029 - 39804835
Alignment:
| Q |
19 |
gacacatagtgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccacctcc |
118 |
Q |
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| T |
39805029 |
gacacgtagtgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtaccgacagtggggctccacctcc |
39804930 |
T |
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| Q |
119 |
aatatagaatgactacaacatataaacaagccatattaatttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatg |
213 |
Q |
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| T |
39804929 |
aatatagaaagactacaacatataaacaagccatattaatttattagaaagattgatcgtattatatataaaggtattgattgattatacaaatg |
39804835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 39813562 - 39813363
Alignment:
| Q |
14 |
gcacagacacatagtgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctcca |
113 |
Q |
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|||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
39813562 |
gcactgacacatagtaaaattgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtaccgacactggagctcct |
39813463 |
T |
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| Q |
114 |
cctccaatatagaatgactacaacatataaacaagccatattaatttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatg |
213 |
Q |
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| T |
39813462 |
cctccaatatagaaagactacaacatataaacaagccatattaattcattcgaaagattaatcgtattatatataaaggtattgattgattatacaaatg |
39813363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 39921334 - 39921198
Alignment:
| Q |
19 |
gacacatagtgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccacctcc |
118 |
Q |
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| T |
39921334 |
gacacatagtgaagttgtttgtttgtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaaataccgacactggagctcctcctcc |
39921235 |
T |
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| Q |
119 |
aatatagaatgactac-aacatataaacaagccatat |
154 |
Q |
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| T |
39921234 |
aatatagaaagactacaaacatataaacaaaccatat |
39921198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 39910015 - 39909898
Alignment:
| Q |
19 |
gacacatagtgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccacctcc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||| ||| ||||| ||||| |
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| T |
39910015 |
gacacatagtgaagttgtttgttagtttccttacattaaatgcggattcaaggatttgaggctcgaatccggaaaataccgacactggagctcctcctcc |
39909916 |
T |
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| Q |
119 |
aatatagaatgactacaa |
136 |
Q |
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| T |
39909915 |
aatatagaatgactacaa |
39909898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 39882632 - 39882529
Alignment:
| Q |
33 |
ttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccacctccaatatagaatgact |
132 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||| ||||| |||||||||||||| |||| |
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| T |
39882632 |
ttgtttgttagtttccttacattaaatgccgattcaaggattcgatgctcgaatccggaaagtactgataatggagctcctcctccaatatagaaagact |
39882533 |
T |
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| Q |
133 |
acaa |
136 |
Q |
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|||| |
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| T |
39882532 |
acaa |
39882529 |
T |
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