View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_low_39 (Length: 219)
Name: NF21408_low_39
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 41107438 - 41107576
Alignment:
| Q |
63 |
caatgaacaaggacaagacatttcaaatcaaaggcacgcctaattcctttgtccctggcatagagttatagtaaaacctttacagcaaggagctaaatca |
162 |
Q |
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| T |
41107438 |
caatgaacaaggacaagacatttcaaatcaaaggcacacctaattcctttgtccctggcatagagttatagtaaaatctttacagcaaggagctaaatca |
41107537 |
T |
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| Q |
163 |
gtacacaaataaaggccaaatccgataaaaacaacgtgg |
201 |
Q |
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| T |
41107538 |
gtacacaaataaaggccaaatccgataaaaacaacgtgg |
41107576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41107896 - 41107961
Alignment:
| Q |
1 |
tgagcttcaaataaccaatctcagtcacaatagcaatcgtgacagggtagttaacctgtttgcaat |
66 |
Q |
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| T |
41107896 |
tgagcttcaaataaccaatctcagacacaatagcaatcgtgatagggtagtgaacctgtttgcaat |
41107961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 35704278 - 35704213
Alignment:
| Q |
63 |
caatgaacaaggacaagacatttcaaatcaaaggcacgcctaattcctttgtccctggcatagagt |
128 |
Q |
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| T |
35704278 |
caatgaaaaaggacaagacattacaattcaaagccacgctaaattcctttgtccctggcatggagt |
35704213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35708602 - 35708537
Alignment:
| Q |
1 |
tgagcttcaaataaccaatctcagtcacaatagcaatcgtgacagggtagttaacctgtttgcaat |
66 |
Q |
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| T |
35708602 |
tgagcttcaaataatcgatctcagagacaatagcaatcatgatagggttgtgaacctggttgcaat |
35708537 |
T |
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