View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21408_low_5 (Length: 583)
Name: NF21408_low_5
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_low_5 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 28)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 14 - 567
Target Start/End: Complemental strand, 10660620 - 10660067
Alignment:
| Q |
14 |
ttctcacagtgacaattgttctaactatctatcaaatgaggaaaaaagttgagnnnnnnnnttctgatccaccaataattgacccgcttgccagagtttc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10660620 |
ttctcacagtgacaattgttctaactatctatcaaatgaggaaaaaagttgagaaaaaaaattctgatccaccaataattgacccgcttgccagagtttc |
10660521 |
T |
|
| Q |
114 |
atatcaagaccttaaccaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaa |
213 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10660520 |
atatcaagaccttcaccaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaa |
10660421 |
T |
|
| Q |
214 |
gataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10660420 |
gataaatttgttgccataaaggttctgaaccttcaaaataagggagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaa |
10660321 |
T |
|
| Q |
314 |
atttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaaca |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10660320 |
atttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaaca |
10660221 |
T |
|
| Q |
414 |
atggctacatccaggtatactgaatgcagggattcaaagattgttggaccttgatcaacgactgaatatcattgttgacattgctagtgtattacattac |
513 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10660220 |
atggctacatccaggtataatgaatgcagggattcaaagattgttggaccttgatcaacgactgaatatcattgttgacattgctagtgtattacattac |
10660121 |
T |
|
| Q |
514 |
cttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaagtaat |
567 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10660120 |
cttcatcacgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaat |
10660067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 78 - 567
Target Start/End: Complemental strand, 10652673 - 10652184
Alignment:
| Q |
78 |
tgatccaccaataattgacccgcttgccagagtttcatatcaagaccttaaccaaggaactgatggattttctgctagaaaccttgttggattaggaggt |
177 |
Q |
| |
|
||||| ||||||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
10652673 |
tgatctaccaataattgacccgcttgctagggtttcatacaaagaccttcaccaaggaactgatggattttctgctagaaacctggttggattaggaagt |
10652574 |
T |
|
| Q |
178 |
tttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattg |
277 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||| | |||||||||||||| ||| |
|
|
| T |
10652573 |
tttggttctgtgtacaaaggaaatcttgcatcagaagataaagttgttgccataaaggtcctgaaccttcaaaaaaagggatctcacaagagcttcgttg |
10652474 |
T |
|
| Q |
278 |
ttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggcttt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10652473 |
ttgaatgtaatgcactaaaaaatatgaggcatagaaatttggttaaggttttgacatgttgttcgagtaccgattacaaaggtcaagagtttaaggcttt |
10652374 |
T |
|
| Q |
378 |
agtgtttgaatacatgaacaatggaagcctagaacaatggctacatccaggtatactgaatgcagggattcaaagattgttggaccttgatcaacgactg |
477 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10652373 |
agtgtttgaatacatgaacaacggaaacctagaacaatggctacatccaggtataatgaatgcagggattcaaagaatgttggaccttgatcaacgactg |
10652274 |
T |
|
| Q |
478 |
aatatcattgttgacattgctagtgtattacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaagtaat |
567 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10652273 |
aatatcattgttgacattgcttctgtattacattaccttcatcatgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaat |
10652184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 91 - 563
Target Start/End: Original strand, 7192756 - 7193228
Alignment:
| Q |
91 |
attgacccgcttgccagagtttcatatcaagaccttaaccaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtct |
190 |
Q |
| |
|
|||||||| || || | ||||||||| || |||||| |||| |||||||| || ||||||||||||||| | ||||||| |||| | ||||||||||| | |
|
|
| T |
7192756 |
attgacccactagctaaagtttcataccaggaccttcaccagggaactgacgggttttctgctagaaacttagttggatcaggaagctttggttctgtgt |
7192855 |
T |
|
| Q |
191 |
acaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgc |
290 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| | ||||| ||| ||||||||| |||| |||||||||||| ||||||| |||||||||||| |
|
|
| T |
7192856 |
acaaaggaaatcttgaatcagaagataaagttgttgccgtgaaggtcatgaaccttcaaaagaagggagctcacaagagtttcattgctgaatgtaatgc |
7192955 |
T |
|
| Q |
291 |
actaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatac |
390 |
Q |
| |
|
|||||||||||| || ||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
7192956 |
actaaaaaatattagacatcgaaatttggttaagattttgacatgttgttccagtacagattacaaaggtcaagaatttaaagctttagtctttgaatac |
7193055 |
T |
|
| Q |
391 |
atgaacaatggaagcctagaacaatggctacatccaggtatactgaatgcagggattcaaagattgttggaccttgatcaacgactgaatatcattgttg |
490 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| | | |||||| || || ||||||| |||||||||||||||| || |||||||| ||||| |
|
|
| T |
7193056 |
atgaacaacggaagcttagaacaatggctacatcctagatcagtgaatgtagagaatcaaagaacgttggaccttgatcaaagattgaatatcgctgttg |
7193155 |
T |
|
| Q |
491 |
acattgctagtgtattacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
| ||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
7193156 |
atattgcctttgtattacattaccttcatcttgaatgtgagcaatcgatcattcattgtgatctaaagccaag |
7193228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 128 - 563
Target Start/End: Original strand, 10604540 - 10604975
Alignment:
| Q |
128 |
accaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgc |
227 |
Q |
| |
|
|||||||||| ||||| || || | ||||||| | ||||||||||| ||||||||||||| |||| ||||||||||| ||||||||||| | ||||| |
|
|
| T |
10604540 |
accaaggaaccgatgggttctcggatagaaacttgattggattaggaagttttggttctgtgtacagaggaaatcttgtgtcagaagataatgtagttgc |
10604639 |
T |
|
| Q |
228 |
cataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggtt |
327 |
Q |
| |
|
||||||| |||| ||| ||||| |||| ||| ||||||| ||||||||||||||||||||||| |||| ||| || || | ||||| || | ||| |
|
|
| T |
10604640 |
tgtaaaggtcctgaacctccaaaagaagggagcacacaagaatttcattgttgaatgtaatgcactcaaaactataagacaccggaatttagttcaagtt |
10604739 |
T |
|
| Q |
328 |
ttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatccag |
427 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||| ||||| ||| |||| ||||| |||||||| ||||||||| ||||||||||| | ||||| | |
|
|
| T |
10604740 |
ttaacatgttgttctagtacagattacaaaggtcaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcctg |
10604839 |
T |
|
| Q |
428 |
gtatactgaatgcagggattcaaagattgttggaccttgatcaacgactgaatatcattgttgacattgctagtgtattacattaccttcatcacgaatg |
527 |
Q |
| |
|
|| | ||||||| | || || | ||||||||||| | || || | || |||||| |||| ||||| || ||| ||||| |||||||| ||||| |
|
|
| T |
10604840 |
agattttaaatgcagagcctccaacaacgttggaccttggtaaaagatttaacatcatttttgatgttgcttctgcattgcattatcttcatcaagaatg |
10604939 |
T |
|
| Q |
528 |
tgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |
|
|
| T |
10604940 |
tgagcaattagtcattcattgtgatctaaagccaag |
10604975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 109 - 563
Target Start/End: Complemental strand, 10588870 - 10588416
Alignment:
| Q |
109 |
gtttcatatcaagaccttaaccaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcat |
208 |
Q |
| |
|
|||||||| ||||| || | ||||||||||||||||| || | | ||||| | |||||| |||| ||||| |||| || |||||||||| ||| | || |
|
|
| T |
10588870 |
gtttcataccaagaactacatcaaggaactgatggattctcagatggaaacttgattggatcaggaagtttttgttccgtatacaaaggaattctcgtat |
10588771 |
T |
|
| Q |
209 |
cagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggca |
308 |
Q |
| |
|
|| ||||||||| |||||| || |||||||||| |||| |||| |||| |||| | ||||| || |||| |||||||||||||| || ||| | || || |
|
|
| T |
10588770 |
cacaagataaatctgttgctatcaaggttctgaaccttaaaaagaagggagctgataagagttttattgccgaatgtaatgcactcaagaatgttagaca |
10588671 |
T |
|
| Q |
309 |
tagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagccta |
408 |
Q |
| |
|
| ||||||||| |||| |||| ||||||||||| |||| ||||| ||||||||||| ||||| |||||||| ||||| |||||||| |||||||| || |
|
|
| T |
10588670 |
tcgaaatttggccaagattttaacatgttgttctggtactgattataaaggtcaagaatttaaagctttagtttttgattacatgaaaaatggaagttta |
10588571 |
T |
|
| Q |
409 |
gaacaatggctacatccaggtatactgaatgcagggattcaaagattgttggaccttgatcaacgactgaatatcattgttgacattgctagtgtattac |
508 |
Q |
| |
|
||||||||||| |||||| | | ||||| ||| | || |||| ||||||||||| ||| || | ||||||| | | || |||||| || | ||| |
|
|
| T |
10588570 |
gaacaatggcttcatccatggaatgtgaattcagagcatccaagaacgttggaccttgttcatagattaaatatcactatcgatattgcttctgcactac |
10588471 |
T |
|
| Q |
509 |
attaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
10588470 |
attatcttcatcatgaatgtgagcaggtggtccttcattgtgatataaagccaag |
10588416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 164 - 563
Target Start/End: Complemental strand, 9836713 - 9836314
Alignment:
| Q |
164 |
ttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctca |
263 |
Q |
| |
|
|||||| |||| |||||||| | || |||||||||||| ||| |||| |||||||| ||||||| ||||||||||||| ||| |||| |||| |||||| |
|
|
| T |
9836713 |
ttggatcaggaagttttggtaccgtatacaaaggaaatattgtatcacaagataaagttgttgctataaaggttctgaacctcaaaaagaagggagctca |
9836614 |
T |
|
| Q |
264 |
caagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaa |
363 |
Q |
| |
|
||||| || |||| ||||||||||||||| |||||||| || ||| ||||||||||||||||| | ||||||||||| |||| ||||| |||||| | |
|
|
| T |
9836613 |
taagagttttattgctgaatgtaatgcactcaaaaatattagacatcgaaatttggtcaaggttataacatgttgttctagtattgattataaaggtgga |
9836514 |
T |
|
| Q |
364 |
gagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatccaggtatactgaatgcagggattcaaagattgttggacc |
463 |
Q |
| |
|
|| ||||| |||||||| ||||| |||||||| ||||||||| ||||||||||||| |||| | | | || || ||| | || ||| ||| ||| |
|
|
| T |
9836513 |
gaatttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctttatccctggacagtggattcagagtatcctagaacattgaacc |
9836414 |
T |
|
| Q |
464 |
ttgatcaacgactgaatatcattgttgacattgctagtgtattacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||| |||| |||| |||||| |||| |||||| || ||||||||| |||||| |||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
9836413 |
ttgttcaaagactaaatatctccattgatattgcttctgcattacattatcttcattgtgaatgtgagcaagtggtcattcattgtgatatcaagccaag |
9836314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 166 - 417
Target Start/End: Original strand, 10564853 - 10565104
Alignment:
| Q |
166 |
ggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcaca |
265 |
Q |
| |
|
|||| |||| |||||||| ||| |||||||||||||||| ||||||||||| |||||||| ||||||| |||| ||| ||||| |||| |||||||| |
|
|
| T |
10564853 |
ggatcaggaagttttggtcttgtgtacaaaggaaatcttgtgtcagaagataatgttgttgccgtaaaggtcctgaacctccaaaagaagggagctcaca |
10564952 |
T |
|
| Q |
266 |
agagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaaga |
365 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| | || ||||||| || |||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
10564953 |
agagtttcattgttgaatgtaatgcactcaaaaatattcgacaccgaaatttagttaaggttttaacctgttgttcaagtacagattacaaaggtcaaga |
10565052 |
T |
|
| Q |
366 |
gtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatgg |
417 |
Q |
| |
|
||||| ||| | || ||||| |||||||| ||||||||| |||| |||||| |
|
|
| T |
10565053 |
atttaaagctctggtttttgagtacatgaaaaatggaagcttagatcaatgg |
10565104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 109 - 417
Target Start/End: Complemental strand, 10717380 - 10717072
Alignment:
| Q |
109 |
gtttcatatcaagaccttaaccaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcat |
208 |
Q |
| |
|
||||||||||||||| | ||| |||||| ||||| || || | |||||| | |||||| |||| ||||||||||||| |||||||||||||||| | |
|
|
| T |
10717380 |
gtttcatatcaagacttacaccgaggaaccgatgggttctcagaaagaaacttgattggatcaggaagttttggttctgtgtacaaaggaaatcttgtgt |
10717281 |
T |
|
| Q |
209 |
cagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggca |
308 |
Q |
| |
|
||||||| || |||||||| ||||||| ||| ||| |||| |||| |||||||||||| |||||||||||||||||||||||||||||||| || || |
|
|
| T |
10717280 |
cagaagacaatgttgttgccgtaaaggtcttgaacctcaaaaagaagggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatatcagaca |
10717181 |
T |
|
| Q |
309 |
tagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagccta |
408 |
Q |
| |
|
||||| | || ||| | || ||||||||||| ||||||||||||||||||||| ||||| ||| |||| ||||| |||||||| ||||||||| || |
|
|
| T |
10717180 |
ccgaaatctagtgaagatattaacatgttgttctagtacagattacaaaggtcaaacttttaaagctctagtttttgattacatgaaaaatggaagctta |
10717081 |
T |
|
| Q |
409 |
gaacaatgg |
417 |
Q |
| |
|
||||||||| |
|
|
| T |
10717080 |
gaacaatgg |
10717072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 109 - 417
Target Start/End: Complemental strand, 10741139 - 10740831
Alignment:
| Q |
109 |
gtttcatatcaagaccttaaccaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcat |
208 |
Q |
| |
|
||||||||||||||| | ||| |||||| ||||| || || | |||||| | | |||| |||| ||||||||||||| |||||||||||||||| |
|
|
| T |
10741139 |
gtttcatatcaagacttacaccgaggaaccgatgggttctcagaaagaaacttgatcggatcaggaagttttggttctgtgtacaaaggaaatcttgtga |
10741040 |
T |
|
| Q |
209 |
cagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggca |
308 |
Q |
| |
|
||||||| || |||||||| ||||||| ||| ||| |||| |||| |||||||||||| ||||||||||||||||||||||| |||||||| || || |
|
|
| T |
10741039 |
cagaagacaatgttgttgccgtaaaggtcttgaacctcaaaaagaagggagctcacaagagtttcattgttgaatgtaatgcactcaaaaatattagaca |
10740940 |
T |
|
| Q |
309 |
tagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagccta |
408 |
Q |
| |
|
||||||| || ||| |||||||||||||||| ||||||||||||||||||||| ||||| ||| | || ||||| |||||||| ||||||||| || |
|
|
| T |
10740939 |
ccgaaatttagttaagattttgacatgttgttctagtacagattacaaaggtcaaacttttaaagctcttgtttttgattacatgaaaaatggaagctta |
10740840 |
T |
|
| Q |
409 |
gaacaatgg |
417 |
Q |
| |
|
||||||||| |
|
|
| T |
10740839 |
gaacaatgg |
10740831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 129 - 563
Target Start/End: Complemental strand, 10763553 - 10763119
Alignment:
| Q |
129 |
ccaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgcc |
228 |
Q |
| |
|
||||||||| ||||| || || | || |||||| | |||| |||| ||| |||| ||| |||| ||||||||||| |||||||| || ||||||| |
|
|
| T |
10763553 |
ccaaggaacagatgggttctcggataaaaacctgatcggatcaggaagttctggtgatgtgtacagaggaaatcttgtgtcagaagacaatattgttgct |
10763454 |
T |
|
| Q |
229 |
ataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttt |
328 |
Q |
| |
|
||||| || | | ||| ||||| || | |||||||||||| |||||||||||||||||||||||||||||||| || | ||||| || ||| ||| |
|
|
| T |
10763453 |
ataaaagtcttcaacctccaaaacaatggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatattcaacaccggaatttagttaagattt |
10763354 |
T |
|
| Q |
329 |
tgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc-ag |
427 |
Q |
| |
|
| ||||||||||| ||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||||| ||||||||| |||||| |||||| || || || |
|
|
| T |
10763353 |
taacatgttgttctagtactgattataaaggtcaagaatttaaagctctggtttttgattacatgaaaaatggaagcttagaacgatggctgcaccctag |
10763254 |
T |
|
| Q |
428 |
gtatactgaatgcagggattcaaagattgttggaccttgatcaacgactgaatatcattgttgacattgctagtgtattacattaccttcatcacgaatg |
527 |
Q |
| |
|
| || | ||||||| || || || | ||||| ||||||||| |||||||||||||| |||| ||||| || ||||||||| ||||||| ||||| |
|
|
| T |
10763253 |
gaatt-taaatgcagagactccaacaacattggatcttgatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatg |
10763155 |
T |
|
| Q |
528 |
tgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
10763154 |
tgagcaattggtccttcattgtgatctaaagccaag |
10763119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 135 - 563
Target Start/End: Original strand, 10558697 - 10559125
Alignment:
| Q |
135 |
aactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaag |
234 |
Q |
| |
|
||||||||| || || |||||||| | |||||| |||||| |||||||| || || |||||||||||| |||||||||||| || |||| | ||| |
|
|
| T |
10558697 |
aactgatggcttctcatctagaaacttgattggatcaggaggctttggttcggtgtataaaggaaatcttatgtcagaagataaagttattgctgtgaag |
10558796 |
T |
|
| Q |
235 |
gttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacat |
334 |
Q |
| |
|
|| ||| |||| |||| || | |||||||||||| || ||| ||||||||||||||||||||||| || ||| ||||| |||| ||| |||| || | |
|
|
| T |
10558797 |
gtcctggaccttgaaaagaatggagctcacaagagttttattaccgaatgtaatgcactaaaaaatattagacatcgaaatctggttaagattttaactt |
10558896 |
T |
|
| Q |
335 |
gttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatccaggtatact |
434 |
Q |
| |
|
||||||| |||| |||||||||||||| || || || ||| |||| |||||||||||||| ||||||||| ||||| | ||| | ||| || | || | |
|
|
| T |
10558897 |
gttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaaactggttgcattcaaggatgat |
10558996 |
T |
|
| Q |
435 |
gaatgcagggattcaaagattgttggaccttgatcaacgactgaatatcattgttgacattgctagtgtattacattaccttcatcacgaatgtgagcaa |
534 |
Q |
| |
|
||||| || | | |||| ||||| ||| ||||| |||||||||||||| |||| ||||| || ||||||||| ||||||| |||||||||||| |
|
|
| T |
10558997 |
gaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaa |
10559096 |
T |
|
| Q |
535 |
gtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
10559097 |
ttggtccttcattgtgatctaaagccaag |
10559125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 128 - 417
Target Start/End: Original strand, 10611498 - 10611787
Alignment:
| Q |
128 |
accaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgc |
227 |
Q |
| |
|
|||||||||| ||||| || || | ||||||| | | |||| |||| |||||||| ||| |||| ||||||||||| |||||||| || ||||||| |
|
|
| T |
10611498 |
accaaggaaccgatgggttctcagatagaaacttgatcggatcaggaagttttggtgatgtgtacagaggaaatcttgtgtcagaagacaatgttgttgc |
10611597 |
T |
|
| Q |
228 |
cataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggtt |
327 |
Q |
| |
|
|||||||| | | ||| ||||| || | |||||||||||| ||||||||||||||||||||||||||| ||| || || ||||||| || ||| || |
|
|
| T |
10611598 |
tataaaggtcttcaacctccaaaacaatggagctcacaagagtttcattgttgaatgtaatgcactaaaatttattagacaccgaaatttagttaagatt |
10611697 |
T |
|
| Q |
328 |
ttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatgg |
417 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||| ||||| || |||| ||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
10611698 |
ttaacatgttgttctagtacagattacaaaggtcaagaatttaaagccctagtttttgattacatgaaaaatggaagcttagaacaatgg |
10611787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 164 - 563
Target Start/End: Complemental strand, 19606250 - 19605851
Alignment:
| Q |
164 |
ttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctca |
263 |
Q |
| |
|
|||||| |||||| || ||||| || || |||||||||||| |||||||||||| || |||| | ||||| |||| |||| |||| |||| |||||| |
|
|
| T |
19606250 |
ttggatcaggaggcttcggttccgtgtataaaggaaatcttatgtcagaagataaagttattgctgttaaggtcctgaaccttgaaaagaagggagctca |
19606151 |
T |
|
| Q |
264 |
caagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaa |
363 |
Q |
| |
|
|||||| || ||| |||||||||||| || |||||||| || ||| ||||||| || ||| |||| || |||||||| |||| ||| ||||||||| | |
|
|
| T |
19606150 |
caagagttttattactgaatgtaatgctctcaaaaatattagacatcgaaatttagttaagattttaacttgttgttctagtattgataacaaaggtcta |
19606051 |
T |
|
| Q |
364 |
gagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatccaggtatactgaatgcagggattcaaagattgttggacc |
463 |
Q |
| |
|
|| || || ||| |||| ||||| ||||||| ||||||||| ||||||||||| | ||||| || | | ||||||||| || |||| ||| | |
|
|
| T |
19606050 |
gaattcaaagctctagtttttgagtacatgagaaatggaagcttagaacaatggttgcatcccgggacaatgaatgcagatcatccaagaacattgaagt |
19605951 |
T |
|
| Q |
464 |
ttgatcaacgactgaatatcattgttgacattgctagtgtattacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
|||| ||| || | |||||| |||| || || || || |||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
19605950 |
ttgagcaaagattaaatatccttgtcgatgtttcttctgcattacattaccttcatcatgaatgtgagcaattggtccttcattgtgatctaaagccaag |
19605851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 221 - 417
Target Start/End: Original strand, 10580885 - 10581081
Alignment:
| Q |
221 |
ttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggt |
320 |
Q |
| |
|
||||||| ||||||| ||| ||| ||||| || | |||||||||||| || |||||||||||||||||||| |||||||| || || |||||| || |
|
|
| T |
10580885 |
ttgttgcagtaaaggtcttgaacctccaaaagaaaggagctcacaagagttttattgttgaatgtaatgcactcaaaaatattagacaccaaaatttagt |
10580984 |
T |
|
| Q |
321 |
caaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatgg |
417 |
Q |
| |
|
||||||| | ||||||||||| |||||| |||||||||| ||||| ||||| |||||||| ||| | |||||||| ||||||||| ||||||||||| |
|
|
| T |
10580985 |
caaggttctaacatgttgttctagtacaaattacaaaggccaagaatttaaagctttagttttttattacatgaaaaatggaagcttagaacaatgg |
10581081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 166 - 417
Target Start/End: Complemental strand, 10747398 - 10747147
Alignment:
| Q |
166 |
ggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcaca |
265 |
Q |
| |
|
|||| |||| |||||||||| || |||||||||||||||| || ||| |||| ||||||| |||| || || | ||||||||| |||| |||||||| |
|
|
| T |
10747398 |
ggatcaggaagttttggttcagtgtacaaaggaaatcttgtgtccgaaaataatgctgttgccgtaaaagtcctaaaccttcaaaagaagggagctcaca |
10747299 |
T |
|
| Q |
266 |
agagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaaga |
365 |
Q |
| |
|
|||| ||||||||||||||||||| ||| || || || || || ||||||| || ||| |||| || |||||||| |||| ||||||||||| ||| || |
|
|
| T |
10747298 |
agagtttcattgttgaatgtaatgtactcaagaacattagacaccgaaatttagttaagattttaacgtgttgttctagtatagattacaaagttcagga |
10747199 |
T |
|
| Q |
366 |
gtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatgg |
417 |
Q |
| |
|
|||||| ||| |||| ||| | ||||| || ||||||||| ||||||||||| |
|
|
| T |
10747198 |
gtttaaagctctagttttttattacataaaaaatggaagcttagaacaatgg |
10747147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 130 - 425
Target Start/End: Complemental strand, 11049076 - 11048781
Alignment:
| Q |
130 |
caaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgcca |
229 |
Q |
| |
|
|||||||| |||||||| || | || |||| | |||||| ||||||||| |||||||| |||| ||||||||||| || |||| ||| ||||||| |
|
|
| T |
11049076 |
caaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctg |
11048977 |
T |
|
| Q |
230 |
taaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggtttt |
329 |
Q |
| |
|
| || || | | ||| ||||| || | |||| |||||| ||||||||||||||||||||||| ||||| || || || |||| || || |||||||| |
|
|
| T |
11048976 |
tgaaagtcttcaacctccaaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaaaacattagacaccgaaacttagttaaggtttt |
11048877 |
T |
|
| Q |
330 |
gacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc |
425 |
Q |
| |
|
|| |||||||| |||||||||||||||||| |||| ||||| || |||| ||||| |||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
11048876 |
aacctgttgttctagtacagattacaaaggtgaagaatttaaagcactagtttttgattacatgaaaaatggaagcttagaacaatggttacatcc |
11048781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 108 - 417
Target Start/End: Complemental strand, 10217190 - 10216881
Alignment:
| Q |
108 |
agtttcatatcaagaccttaaccaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgca |
207 |
Q |
| |
|
||||||||| |||||| | | |||||||||||||| || || | || |||| | |||||| |||| ||||||||| ||| || | || ||||||| |
|
|
| T |
10217190 |
agtttcataccaagacttacatcaaggaactgatgggttctcggataaaaacttgattggatcaggaagttttggttgtgtgtatagcgggaatcttgtg |
10217091 |
T |
|
| Q |
208 |
tcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggc |
307 |
Q |
| |
|
||||||| ||| ||||||| | ||||| || | ||| ||||| || | |||| |||||| || |||||||||||||||||||| ||||| || || | |
|
|
| T |
10217090 |
tcagaagttaatgttgttgctgtgaaggtcctaaacctccaaaagaatggagctagcaagagttttattgttgaatgtaatgcactcaaaaacattagac |
10216991 |
T |
|
| Q |
308 |
atagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcct |
407 |
Q |
| |
|
| |||| | || |||||||| ||||||||||| |||||| | |||||||||||||| ||||| ||| |||| ||| | |||||||| ||||||||| | |
|
|
| T |
10216990 |
accgaaactcagttaaggttttaacatgttgttctagtacaaactacaaaggtcaagaatttaaagctctagttttttattacatgaaaaatggaagctt |
10216891 |
T |
|
| Q |
408 |
agaacaatgg |
417 |
Q |
| |
|
|||||||||| |
|
|
| T |
10216890 |
agaacaatgg |
10216881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 222 - 359
Target Start/End: Original strand, 10550666 - 10550803
Alignment:
| Q |
222 |
tgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtc |
321 |
Q |
| |
|
|||||||||||| || || | |||| |||| |||| || ||||||||| ||||||| |||||||||||||||||||||||| ||||| |||||| | || |
|
|
| T |
10550666 |
tgttgccataaaagtcctaaaccttaaaaagaagggagttcacaagagtttcattgctgaatgtaatgcactaaaaaatattaggcacagaaatctagtt |
10550765 |
T |
|
| Q |
322 |
aaggttttgacatgttgttcaagtacagattacaaagg |
359 |
Q |
| |
|
|| ||||||| |||||||| || |||||||||||||| |
|
|
| T |
10550766 |
aaaattttgacttgttgttccagcacagattacaaagg |
10550803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 210 - 417
Target Start/End: Original strand, 9824970 - 9825178
Alignment:
| Q |
210 |
agaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcat |
309 |
Q |
| |
|
|||||||||| || ||||||||||||| ||| | || |||| |||| |||||||||||| || ||| |||||||||| ||| |||||||| || ||| |
|
|
| T |
9824970 |
agaagataaagttattgccataaaggtcttgaactttgaaaagaagggagctcacaagagttttattaccgaatgtaatgaactcaaaaatattagacat |
9825069 |
T |
|
| Q |
310 |
agaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaat-ggaagccta |
408 |
Q |
| |
|
|||||||||| ||| |||| ||||||| ||| |||| ||||||||||| ||||| || || ||| |||| ||||| |||||| | ||| |||||| || |
|
|
| T |
9825070 |
cgaaatttggttaagattttaacatgtttttctagtatcgattacaaagggcaagaattcaaagctctagtttttgagtacatgcaaaatgggaagctta |
9825169 |
T |
|
| Q |
409 |
gaacaatgg |
417 |
Q |
| |
|
||||||||| |
|
|
| T |
9825170 |
gaacaatgg |
9825178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 567
Target Start/End: Complemental strand, 11048702 - 11048639
Alignment:
| Q |
504 |
attacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaagtaat |
567 |
Q |
| |
|
||||||||| || ||||| |||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
11048702 |
attacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagtaat |
11048639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 563
Target Start/End: Complemental strand, 10216794 - 10216735
Alignment:
| Q |
504 |
attacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||||||||| || ||||| |||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
10216794 |
attacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaag |
10216735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 10581167 - 10581226
Alignment:
| Q |
504 |
attacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
10581167 |
attacattatcttcatcgagaatgtgagcaattggtccttcgttgtgatctaaagccaag |
10581226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 10611874 - 10611933
Alignment:
| Q |
504 |
attacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||||||||| |||||| | |||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
10611874 |
attacattatcttcataatgaatgtgagcaattggtccttcattgtgatataaagccaag |
10611933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 563
Target Start/End: Complemental strand, 10740744 - 10740685
Alignment:
| Q |
504 |
attacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||||||||| ||||| || |||||||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
10740744 |
attacattatcttcaccaagaatgtgaacaattggtccttcattgtgatctaaagccaag |
10740685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 419
Target Start/End: Complemental strand, 9851100 - 9850830
Alignment:
| Q |
151 |
gctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatcctt--ca |
248 |
Q |
| |
|
||||||||| | |||||||| |||| ||||||||||| || ||||||| || || |||||||||| || || |||||||||| ||| |||| | |
|
|
| T |
9851100 |
gctagaaacttgattggattaagaggctttggttctgtgtataaaggaattcctgtcagagaagataaaattatttccataaaggtcttgaaccttgaaa |
9851001 |
T |
|
| Q |
249 |
aaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtaca |
348 |
Q |
| |
|
||| |||| || ||||||||| || ||| ||||||||||| || ||||||| || ||| |||||||||| ||| |||| || | |||||| |||| |
|
|
| T |
9851000 |
aaaaaagggagttcacaagagttttattacggaatgtaatgccct-caaaatattagacatcgaaatttggttaagattttaacttcttgttctagtatc |
9850902 |
T |
|
| Q |
349 |
gattacaaaggtcaagagtt-taaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggct |
419 |
Q |
| |
|
||||||||||| || || || || ||| |||| ||| | ||||||| ||||||||| ||||||||||||| |
|
|
| T |
9850901 |
gattacaaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaacaatggct |
9850830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 10565191 - 10565250
Alignment:
| Q |
504 |
attacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||||||||| |||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
10565191 |
attacattatcttcatagagaatgtgaagaattggtcattcattgtgatctaaagccaag |
10565250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 563
Target Start/End: Complemental strand, 10747060 - 10747001
Alignment:
| Q |
504 |
attacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||||||||| ||||| || |||||||||||| | |||||||| |||||||| |||||||| |
|
|
| T |
10747060 |
attacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaag |
10747001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 10652729 - 10652693
Alignment:
| Q |
22 |
gtgacaattgttctaactatctatcaaatgaggaaaa |
58 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
10652729 |
gtgacaattattctaactatctaccaaatgaggaaaa |
10652693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 166 - 425
Target Start/End: Original strand, 12907016 - 12907275
Alignment:
| Q |
166 |
ggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcaca |
265 |
Q |
| |
|
|||| |||| |||||||||| || |||||||||||| ||| ||||||||||| ||||||| ||||||| ||| ||| |||| |||| ||||||| |
|
|
| T |
12907016 |
ggatcaggaagttttggttccgtatacaaaggaaatattgtttcagaagataatgttgttgcagtaaaggtcttgaacctccaaacaaagggcgctcaca |
12907115 |
T |
|
| Q |
266 |
agagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaaga |
365 |
Q |
| |
|
| || ||||||||||||||||| ||||| |||||||| || || ||||||||||| |||||||| ||||||||||| || ||| |||||||||||||||| |
|
|
| T |
12907116 |
aaagtttcattgttgaatgtaacgcactcaaaaatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaaga |
12907215 |
T |
|
| Q |
366 |
gtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc |
425 |
Q |
| |
|
||||| ||| |||| |||||||||||||| ||||||||| ||||||| ||| ||||||| |
|
|
| T |
12907216 |
atttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcc |
12907275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 166 - 425
Target Start/End: Original strand, 12932105 - 12932364
Alignment:
| Q |
166 |
ggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcaca |
265 |
Q |
| |
|
|||| |||| |||||||||| || |||||||||||| | | ||||||||||| ||||||| ||||||| ||| || ||||| |||| |||||||| |
|
|
| T |
12932105 |
ggatcaggaagttttggttccgtttacaaaggaaatatagtgtcagaagataatgttgttgcagtaaaggtcttgaatctgcaaaaaaagggagctcaca |
12932204 |
T |
|
| Q |
266 |
agagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaaga |
365 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||| || || |||||||||| |||||||| ||||||||||| || ||| |||||||||||||||| |
|
|
| T |
12932205 |
agagtttcattgttgaatgtaacgcactcaaaaatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaaga |
12932304 |
T |
|
| Q |
366 |
gtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc |
425 |
Q |
| |
|
||||| || |||| |||||||||||||| ||||||||| ||||||| ||| ||||||| |
|
|
| T |
12932305 |
atttaaagcactagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcc |
12932364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 166 - 425
Target Start/End: Original strand, 12948470 - 12948729
Alignment:
| Q |
166 |
ggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcaca |
265 |
Q |
| |
|
|||| |||| |||||||||| || |||| ||||||| ||| ||||||||||| ||||||| |||| || ||| ||| || || |||| |||||||| |
|
|
| T |
12948470 |
ggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgttgttgcagtaaaagtcttgaacctccagaaaaagggagctcaca |
12948569 |
T |
|
| Q |
266 |
agagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaaga |
365 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || || |||||||||| |||||||| ||||||||||| || ||| || ||||||| ||||| |
|
|
| T |
12948570 |
agagtttcattgttgaatgtaatgcactaaaaaatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaataacaaaggccaaga |
12948669 |
T |
|
| Q |
366 |
gtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc |
425 |
Q |
| |
|
||||| ||| |||| |||||||||||||| ||||||||| ||||||| ||| ||||||| |
|
|
| T |
12948670 |
atttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcc |
12948729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 166 - 425
Target Start/End: Original strand, 12957904 - 12958163
Alignment:
| Q |
166 |
ggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcaca |
265 |
Q |
| |
|
|||| |||| |||||||||| || |||| ||||||| ||| ||||||||||| ||||||| ||||| || ||| ||| || || |||| |||||||| |
|
|
| T |
12957904 |
ggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgttgttgcaataaaagtcttgaacctccagaaaaagggagctcaca |
12958003 |
T |
|
| Q |
266 |
agagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaaga |
365 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||| || || |||||||||| | |||||| ||||||||||| || ||| |||||||||||||||| |
|
|
| T |
12958004 |
agagtttcattgttgaatgtaacgcactcaaaaatattagacaccgaaatttggttagggttttaacatgttgttctagcacaaattacaaaggtcaaga |
12958103 |
T |
|
| Q |
366 |
gtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc |
425 |
Q |
| |
|
||||| ||| |||| |||||||||||| | ||||||||| ||||||| ||| ||||||| |
|
|
| T |
12958104 |
atttaaagctctagtttttgaatacatggaaaatggaagcttagaacagtggttacatcc |
12958163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 132 - 425
Target Start/End: Original strand, 12899362 - 12899655
Alignment:
| Q |
132 |
aggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccata |
231 |
Q |
| |
|
|||||| |||||||| || | ||||||| | | |||| |||| |||||||||| || |||| ||||||| | | ||||||||||| ||||||| || |
|
|
| T |
12899362 |
aggaaccgatggattctcagatagaaacttgatcggatcaggaagttttggttccgtatacagaggaaatatagtttcagaagataatgttgttgcagta |
12899461 |
T |
|
| Q |
232 |
aaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttga |
331 |
Q |
| |
|
||||| ||| || ||||| |||| ||||||||||| |||||| | |||||||||||||| ||||| || | || |||||||||| |||||||| | |
|
|
| T |
12899462 |
aaggtcttgaatctgcaaaaaaagggtgctcacaagagtttcattttagaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaa |
12899561 |
T |
|
| Q |
332 |
catgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc |
425 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||| ||||| ||| |||| |||||||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
12899562 |
catgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacaatggttacatcc |
12899655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 12899734 - 12899793
Alignment:
| Q |
504 |
attacattaccttcatcacgaatgtgagcaagtggtcattcattgtgatctaaagccaag |
563 |
Q |
| |
|
||||||||| ||||||| |||||||||||| | ||| ||||||||||| |||||||||| |
|
|
| T |
12899734 |
attacattatcttcatcgagaatgtgagcaattagtctttcattgtgatataaagccaag |
12899793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 132 - 425
Target Start/End: Complemental strand, 17923820 - 17923527
Alignment:
| Q |
132 |
aggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccata |
231 |
Q |
| |
|
|||||| |||||||| || | ||||||| | | |||| |||| |||||||||| || |||| ||||||| ||| ||||||||||| ||||||| | |
|
|
| T |
17923820 |
aggaaccgatggattctcagatagaaacatgatcggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgttgttgcagtt |
17923721 |
T |
|
| Q |
232 |
aaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttga |
331 |
Q |
| |
|
|| || ||| ||| || || |||| |||||||||||| ||| ||||||||||||| ||||| |||||||| || || |||||||||| |||||||| | |
|
|
| T |
17923720 |
aaagtcttgaacctccataaaaagggagctcacaagagtttcgttgttgaatgtaacgcactcaaaaatattagacaccgaaatttggttaaggttttaa |
17923621 |
T |
|
| Q |
332 |
catgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc |
425 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||| ||||| ||| |||| |||||||||||||| ||||||||| ||||||| ||| ||||||| |
|
|
| T |
17923620 |
catgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcc |
17923527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 311 - 425
Target Start/End: Original strand, 7264 - 7378
Alignment:
| Q |
311 |
gaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctaga |
410 |
Q |
| |
|
|||||||||| | |||||| ||||||||||| || ||| |||||||||||||||| ||||| ||| |||| |||||||||||||| ||||||||| |||| |
|
|
| T |
7264 |
gaaatttggttagggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttaga |
7363 |
T |
|
| Q |
411 |
acaatggctacatcc |
425 |
Q |
| |
|
||| ||| ||||||| |
|
|
| T |
7364 |
acagtggttacatcc |
7378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 411
Target Start/End: Complemental strand, 31467485 - 31467300
Alignment:
| Q |
226 |
gccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaagg |
325 |
Q |
| |
|
|||||||||||| ||| ||||| || || | |||||||||||| ||| ||| |||||| |||||||| |||||||| || || |||||||||| ||| |
|
|
| T |
31467485 |
gccataaaggttttgaagcttcataagaaaggagctcacaagagtttccttgctgaatgcaatgcactcaaaaatattagacaccgaaatttggttaaga |
31467386 |
T |
|
| Q |
326 |
ttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaa |
411 |
Q |
| |
|
|||| ||| | ||||| |||||||||| ||||| |||||| ||||| ||| | || || || |||||||| || |||||| ||||| |
|
|
| T |
31467385 |
ttttaacaagctgttccagtacagatttcaaagatcaagaatttaaagctcttgttttcgagtacatgaaaaacggaagcttagaa |
31467300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 425
Target Start/End: Original strand, 28605461 - 28605711
Alignment:
| Q |
175 |
ggttttggttctgtctacaaaggaaatcttgcatcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttca |
274 |
Q |
| |
|
|||||||| | ||| || ||||||| ||||| |||||||| | | ||||||| |||||||| ||| ||||||| | || ||| |||||||| |||| |
|
|
| T |
28605461 |
ggttttggatttgtatataaaggaattcttgagtcagaagaaagagttgttgctataaaggtcttgaaccttcaagtcaggggagcgcacaagagtttca |
28605560 |
T |
|
| Q |
275 |
ttgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggc |
374 |
Q |
| |
|
| | |||||| |||||||| |||| ||| | ||||| ||| | |||||| |||| |||||||||||||||| |||||||| ||| | || || || || |
|
|
| T |
28605561 |
tcgctgaatgcaatgcactcaaaagtatccgtcataggaatcttgtcaagattttaacatgttgttcaagtatggattacaatggtaatgaattcaaagc |
28605660 |
T |
|
| Q |
375 |
tttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc |
425 |
Q |
| |
|
|||||| ||||| |||||| | |||||||| |||| ||||||| ||||| |
|
|
| T |
28605661 |
tttagtttttgagtacatggaaaatggaagtttagataaatggctgcatcc |
28605711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 410
Target Start/End: Complemental strand, 39876224 - 39876022
Alignment:
| Q |
208 |
tcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggc |
307 |
Q |
| |
|
|||||||| | | ||||||| |||||||||| | |||||| || || | |||||| || || ||| ||| ||||||||||| | | |||||| |||| |
|
|
| T |
39876224 |
tcagaagaaagagttgttgctgtaaaggttctaaaccttcagaagaaaggagctcataaaagtttccttgccgaatgtaatgcttttagaaatatcaggc |
39876125 |
T |
|
| Q |
308 |
atagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcct |
407 |
Q |
| |
|
|||||||| | |||||| || | |||||||| || ||| ||| |||||||| | || |||||||| |||| | |||||||||||| ||||| ||| | |
|
|
| T |
39876124 |
atagaaatctagtcaagattatcacatgttgctctagtgtggatcacaaaggtgacgactttaaggcaatagtttatgaatacatgaaaaatgggagctt |
39876025 |
T |
|
| Q |
408 |
aga |
410 |
Q |
| |
|
||| |
|
|
| T |
39876024 |
aga |
39876022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 338
Target Start/End: Complemental strand, 39899036 - 39898906
Alignment:
| Q |
208 |
tcagaagataaatttgttgccataaaggttctgatccttcaaaataaggtagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggc |
307 |
Q |
| |
|
|||||||| | | ||||||| |||||||||| | |||||| || || | |||||| || || ||||||| ||||||||||| | | |||||| |||| |
|
|
| T |
39899036 |
tcagaagaaagagttgttgctgtaaaggttctaaaccttcagaagaaaggagctcataaaagtttcattgccgaatgtaatgctttcagaaatatcaggc |
39898937 |
T |
|
| Q |
308 |
atagaaatttggtcaaggttttgacatgttg |
338 |
Q |
| |
|
|||||||| | ||||||||| | |||||||| |
|
|
| T |
39898936 |
atagaaatctagtcaaggttatcacatgttg |
39898906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University