View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_low_8 (Length: 489)
Name: NF21408_low_8
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 265 - 483
Target Start/End: Original strand, 42367266 - 42367486
Alignment:
| Q |
265 |
tttgtttatcattttcaaaacaatacaattaaatttttcatcttcttcaaa-caacatagtttaattcaattgaataactcaattcattaaaacaacatc |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42367266 |
tttgtttatcattttcaaaacaatacaattaaatttttcatcttcttcaaaacaacatagtttaattcaattgaataactcaattcgttaaaacaacatc |
42367365 |
T |
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| Q |
364 |
aataacttctcacgaaaccc-nnnnnnntgcgttgaagttagtggtcactacttcgctgaaaggtactaaatcattcttcctcattgtaggaggaacctt |
462 |
Q |
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|||||||||||| |||||| ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42367366 |
aataacttctcataaaacccaaaaaaaatgcgttgaagttactggtcactacttcactcaaaggtactaaatcattcttcctcattgtaggaggaacctt |
42367465 |
T |
|
| Q |
463 |
ccaaccacttccctttgcttc |
483 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
42367466 |
ccaaccacttcccttggcttc |
42367486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 42367021 - 42367147
Alignment:
| Q |
19 |
cattgaaggtggtctaccatagtacttattaatcttattaattttagccctttggtttttgtctataaatgagaaccgttggatctcgcatgcttatcgt |
118 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42367021 |
cattgaaggtggtctacgatagaccttattaatcttattaattttagccctttagtttttgtctataaatgagaaccgttggatctcgcatgcttatcgt |
42367120 |
T |
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| Q |
119 |
atcttatagtaaaccaccaataactga |
145 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
42367121 |
atcttatagtaaaccaccaacaactga |
42367147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 1409795 - 1409909
Alignment:
| Q |
20 |
attgaaggtggtctaccatagtacttattaatcttattaattttagccctttggtttttgtctataaatgagaaccgttggatctcgcatgcttatcgta |
119 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
1409795 |
attgaaggtggtctaccatagactttattaatctttttaatttgagccctttgatttttgtctataaatgagaaccgttggatcacgcatgtctatcgta |
1409894 |
T |
|
| Q |
120 |
tcttatagtaaacca |
134 |
Q |
| |
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||||||||||||||| |
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| T |
1409895 |
tcttatagtaaacca |
1409909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 1410276 - 1410309
Alignment:
| Q |
282 |
aaacaatacaattaaatttttcatcttcttcaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
1410276 |
aaacaatacaattaaatttttcatcttcttcaaa |
1410309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 12830662 - 12830615
Alignment:
| Q |
265 |
tttgtttatcattttcaaaacaatacaattaaatttttcatcttcttc |
312 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| ||||| |
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|
| T |
12830662 |
tttgtttatcatcttcaaaacaataaaattaaatttttcatcatcttc |
12830615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 12862642 - 12862595
Alignment:
| Q |
265 |
tttgtttatcattttcaaaacaatacaattaaatttttcatcttcttc |
312 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| ||||| |
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|
| T |
12862642 |
tttgtttatcatcttcaaaacaataaaattaaatttttcatcatcttc |
12862595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 22819242 - 22819195
Alignment:
| Q |
265 |
tttgtttatcattttcaaaacaatacaattaaatttttcatcttcttc |
312 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| |||||| ||||| |
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|
| T |
22819242 |
tttgtttatcatcttcaaaacaataaaattaaattcttcatcatcttc |
22819195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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