View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21409_high_3 (Length: 424)
Name: NF21409_high_3
Description: NF21409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21409_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 32158662 - 32158269
Alignment:
| Q |
17 |
atgttgttcaagaagaaggtacaatcttgggacagagacgtaacacgacatacaggagaatgtgtgcccatgtccaaaactaccggcaatgttattgcca |
116 |
Q |
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| T |
32158662 |
atgttgttcaagaagaaggtacaatcttgggacagagacgtaacacgacatacaggagaatgtgtgcccatgtccaaaactaccggcaatgttattgcca |
32158563 |
T |
|
| Q |
117 |
aactggccacgaggaaacataaagaatctttttaaaatcatacaagacaaacattactacatcagtgtctgtatatactttggaacatgttggagtaggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158562 |
aactggccacgaggaaacataaagaatctttttaaaatcatacaagacaaacattactacatcagtgtctgtatatactttggaacatgttggagtaggt |
32158463 |
T |
|
| Q |
217 |
tgtgttcatattatgaaataaaaactttgagtttgacattccattttatatagcactaactaacacctgttcatataatatgccaatgtcagagaaacca |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158462 |
tgtgttcatattatgaaataacaactttgagtttgacattccattttatatagcactaactaacacctgttcatataatatgccaatgtcagagaaacca |
32158363 |
T |
|
| Q |
317 |
gtgaaatactatgtggtgagtttattttgtttgaatctgaacttagttattgttgatgaaatatagttaataatgctaatgttattacacaggt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158362 |
gtgaaatactatgtggtgagtttattttgtttgaatctgaacttagttattgttgatgaaatatagttaataatgctaatgttattacacaggt |
32158269 |
T |
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