View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21409_low_4 (Length: 423)
Name: NF21409_low_4
Description: NF21409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21409_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 148 - 408
Target Start/End: Original strand, 43093947 - 43094206
Alignment:
| Q |
148 |
gtgaatggatgcaggattaaccaaaataacaatttnnnnnnnnnntcattgagaacaaaataaactcacacaagaaaaagaaagtgaaactaattgggtg |
247 |
Q |
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| T |
43093947 |
gtgaatggatgcaggattaaccaaaataacaatttaaaaaaaaa-tcattgagaacagaacaaactcacacaagaaaaagaaagtgaaactaattgggtg |
43094045 |
T |
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| Q |
248 |
ttttgagcgatgaaattttatggtcaaatcataaattatatagggagaaaacgcaggctggttaatgaaatgggaaaaaagttaacgaaaacagaaccag |
347 |
Q |
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| T |
43094046 |
ttttgagctatgaaattttatggtcaaatcacaaattatatagggagaaaacgcaggctggttaatgaaatgggaaaaaagttaatgaaaacagaaccag |
43094145 |
T |
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| Q |
348 |
acaaagcaaaaattaaagttaggtgataatggttgaggtttgtgaaggtgaatgaaaaatg |
408 |
Q |
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| T |
43094146 |
acaaagcaaaaattaaagttaggtgacaatggttgaggtttgtcaaggtgaatgaaaaatg |
43094206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 43093810 - 43093883
Alignment:
| Q |
11 |
cacagatagactcagtgcaccgatagttcccaattgaaatttttctccatcacccatcttgttctttgttgttc |
84 |
Q |
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| T |
43093810 |
cacagatagactcagtgcaccgatagttcccaattgaaatttttctccatcacccatcttgttctttgttgttc |
43093883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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