View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21409_low_7 (Length: 246)
Name: NF21409_low_7
Description: NF21409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21409_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 19159305 - 19159073
Alignment:
| Q |
2 |
tccagattggcagcaatattattccgataagaacaacttctttgatcagcacagtttcgatgaatttccctatgcaagggcagtctgatcgagagatacc |
101 |
Q |
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| T |
19159305 |
tccagattggcagcagtattattccgataaggataacttctttgatcagcacaatttcgatgaatttccctatgcaagggcaggacgatcgagagatacc |
19159206 |
T |
|
| Q |
102 |
atggtcctacgcgatggtggttatcaggtgcataatcatacgcgttccaattatcgttcctacgggaaagagaatgtgcaccctgtggataccattgagg |
201 |
Q |
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|||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
19159205 |
atggtcttgcgcgatggtggttatcaggtgcaaaatcatacgcgttccaattatcgttcctacgggaaagagaatatgcaccatgtggataccattgagg |
19159106 |
T |
|
| Q |
202 |
ctgatcacatgaaataaaggaaggtacacaggt |
234 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
19159105 |
ttgatcacgtgaaataaaggaaggtacacaggt |
19159073 |
T |
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