View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21409_low_8 (Length: 244)
Name: NF21409_low_8
Description: NF21409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21409_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 24896175 - 24896262
Alignment:
| Q |
146 |
ttatttatatattatgtacatagtttcattcttacaattttttgtgtgcgggagttgacaatgagattgcttgttgtatagtttttta |
233 |
Q |
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| T |
24896175 |
ttatttatatattatgtacatagtttcattcttacaattttttgtgtgcgggagttgacaatgagattgcttgttgtatagtttttta |
24896262 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 24896076 - 24896171
Alignment:
| Q |
7 |
aatatatacaaattaagctgannnnnnnaattaagagttctcgttcatacatatacacacatacacggttgaatcagtttgtaaaacagttggcat |
102 |
Q |
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| T |
24896076 |
aatatatacaaattaagctgatttttttatttaagagttctcgttcatacatatacacacatacacggttgaatcagtttgtaaaacagttggcat |
24896171 |
T |
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