View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2140_high_10 (Length: 406)

Name: NF2140_high_10

Description: NF2140

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2140_high_10

[»] chr4 (1 HSPs)

Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 324; E-Value: 0

Query Start/End: Original strand, 19 - 390

Target Start/End: Original strand, 42561049 - 42561420

Alignment:

Q	19	aggcctagcattaaagccagcatcattattaacggtttcagccgccgttaactcggctgcagcagtggcagcactgcggatatcatcgggtgaattggag	118	Q
		\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|
T	42561049	aggcctaccatttaagccagcatcattattaacggcttcagccgccgttaactcagctgcagctgtggcagcactgcggatatcatctggtgaattagac	42561148	T

Q	119	gcaggcaccgggtacttgctagctgaattagggaagtttagaacagcgtccccgcctttgagagccaaagccgcgacatcataagccgtggctgccatct	218	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	42561149	gcaggcaccgggtacttgctagctgaattagggaagtttagaacagcatccccgcctttgagggccaaagtcgcgacatcataagccgcggctgccatct	42561248	T

Q	219	caggggtagggaatgtgcctagccatatgcggttggtcttacgaggctcgcggatttcagtcacccattttcctcctcggctcctaattccgtggtatgt	318	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42561249	caggggtagggaatgtgcctagccatatgcggttggtcttacgaggctcgcggatttcagtcacccattttcctcctcggctcctaattccgtggtatgt	42561348	T

Q	319	tgggtgtcttttggaagaagaagatgatgaagaagccatacttgttagaattaatgaaacttataattgcta	390	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42561349	tgggtgtcttttggaagaagaagatgatgaagaagccatacttgttagaattaatgaaacttataattgcta	42561420	T

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