View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2140_high_14 (Length: 364)
Name: NF2140_high_14
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2140_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 43623985 - 43624325
Alignment:
| Q |
20 |
gtgctttggggaaagagcagagagcaaacacaaaaagcctcacaagacttggaacaggcatccggttaaaatgagctacgtgtggaatgtggattatata |
119 |
Q |
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| T |
43623985 |
gtgctttggggaaagagcagagagcaaacacaaaaagcctcacaagacttggaacaggcatccagttaaaatgagctacgtgtggaatgtggattatata |
43624084 |
T |
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| Q |
120 |
tgttttttggattaaaagaaattgtaaaaaatatatatgatcgtggattttatccc--------atatatatatttcataagtataactcagataatgtt |
211 |
Q |
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| T |
43624085 |
tgttttttggattaaaagaaattgtaaaaaatatatatgatcgtggatattatcccatatatatatatatatatttcataagtacaactcagatgatgtt |
43624184 |
T |
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| Q |
212 |
tcataaacatttaatatgttgtagactatattgaaattatttctccatgcatgatatgtgcgtttcgttgaacgcttaagnnnnnnntttgcctacaatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||| |
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| T |
43624185 |
gcataaacatttaatatgttgtagactatattgaaattatttctcaatgcatgatatatgcgtttcgttgaacgcctaagaaaaaattttgcctacaatt |
43624284 |
T |
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| Q |
312 |
tataggtcataaactcattgcgtttaagcccgtgatgatgt |
352 |
Q |
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| T |
43624285 |
tataggtcataaactcactgcgcttaagcccatgaagatgt |
43624325 |
T |
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