View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2140_high_15 (Length: 298)
Name: NF2140_high_15
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2140_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 866389 - 866665
Alignment:
| Q |
1 |
ctttgggtttgagaaaagaaaatgcctttcactttcaaaattttagctaaacataannnnnnnnnnnctttacagatgttcagatgaaaagaatccaaga |
100 |
Q |
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| T |
866389 |
ctttgggtttgaaaaaagaaaatgcctttcactttcaaaattttagctaaacattatattatttct--tttgcagatgttcagatgaaaagaatccaaga |
866486 |
T |
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| Q |
101 |
gtgaaaccttataaattctcaaatcaaaagctgaaagacttgggattggaattcacacctgtgaaacaatgtttatatgacactgttaggagtctacaag |
200 |
Q |
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| T |
866487 |
gtgaaaccttataaattttcaaatcaaaagctgaaagacttgggattggaattcacacctgtgaagcaatgtttatatgacactgttaggagtctacaag |
866586 |
T |
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| Q |
201 |
agaaaggacaccttcctattcctcccatgcaagaagactctatctaagttacaacaaaatgctataaatagtactcttat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
866587 |
agaaaggacaccttcctattcctcccatgcaagaagactctgcttaagttacaacaaaatgctat-aatagtactcttat |
866665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 45243806 - 45243951
Alignment:
| Q |
77 |
tgttcagatgaaaagaatccaagagtgaaaccttataaattctcaaatcaaaagctgaaagacttgggattggaattcacacctgtgaaacaatgtttat |
176 |
Q |
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|||||||||||||||||||| |||||||||| ||| ||||||||| |||| ||||| || |||||||||||||| ||||| |||| ||||||||| |
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| T |
45243806 |
tgttcagatgaaaagaatcctcgagtgaaaccacatatcttctcaaataaaaaactgaaggatttgggattggaatttacaccagtgagtgaatgtttat |
45243905 |
T |
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| Q |
177 |
atgacactgttaggagtctacaagagaaaggacaccttcctattcc |
222 |
Q |
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|||| || |||| ||| |||||||| |||| |||||| ||||||| |
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| T |
45243906 |
atgaaaccgttaagagcctacaagaccaaggtcacctttctattcc |
45243951 |
T |
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