View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2140_high_3 (Length: 661)

Name: NF2140_high_3
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2140_high_3
NF2140_high_3
[»] chr4 (14 HSPs)
chr4 (347-661)||(30414015-30414329)
chr4 (1-250)||(27292940-27293189)
chr4 (1-251)||(4919008-4919257)
chr4 (1-250)||(42976325-42976573)
chr4 (26-93)||(45989609-45989676)
chr4 (26-103)||(20133410-20133487)
chr4 (156-252)||(24228273-24228369)
chr4 (249-293)||(30413916-30413960)
chr4 (1-93)||(42069020-42069112)
chr4 (1-103)||(55919361-55919463)
chr4 (26-93)||(47031458-47031525)
chr4 (159-249)||(15531344-15531434)
chr4 (32-103)||(15531216-15531287)
chr4 (1-103)||(28679508-28679610)
[»] chr6 (5 HSPs)
chr6 (1-243)||(12938643-12938885)
chr6 (1-223)||(33694802-33695023)
chr6 (26-205)||(28138039-28138217)
chr6 (69-133)||(14532051-14532115)
chr6 (163-246)||(12466398-12466481)
[»] chr5 (8 HSPs)
chr5 (1-252)||(30624856-30625107)
chr5 (1-248)||(41413417-41413664)
chr5 (1-248)||(1828408-1828655)
chr5 (1-248)||(40313873-40314120)
chr5 (29-250)||(31482071-31482292)
chr5 (1-103)||(24788298-24788400)
chr5 (50-103)||(39884696-39884749)
chr5 (159-249)||(39884549-39884639)
[»] chr1 (6 HSPs)
chr1 (1-248)||(27286160-27286407)
chr1 (1-249)||(52385788-52386036)
chr1 (26-189)||(39241614-39241773)
chr1 (1-103)||(12981521-12981623)
chr1 (1-103)||(45348242-45348344)
chr1 (27-93)||(45325635-45325701)
[»] chr3 (15 HSPs)
chr3 (1-248)||(50650366-50650613)
chr3 (1-249)||(12938396-12938644)
chr3 (1-246)||(31658794-31659038)
chr3 (36-249)||(29833270-29833483)
chr3 (48-249)||(33216676-33216877)
chr3 (26-103)||(39833230-39833307)
chr3 (50-103)||(36950181-36950234)
chr3 (32-103)||(29703541-29703612)
chr3 (5-103)||(5232946-5233044)
chr3 (5-103)||(20104322-20104420)
chr3 (159-249)||(53282147-53282237)
chr3 (32-103)||(53282294-53282365)
chr3 (163-249)||(29703673-29703759)
chr3 (159-248)||(36950291-36950380)
chr3 (160-248)||(20104177-20104265)
[»] chr7 (9 HSPs)
chr7 (1-249)||(29833919-29834167)
chr7 (1-249)||(19436667-19436915)
chr7 (1-103)||(45972423-45972525)
chr7 (75-190)||(29258441-29258556)
chr7 (26-93)||(6442636-6442703)
chr7 (26-92)||(34094118-34094184)
chr7 (26-103)||(29243380-29243455)
chr7 (5-103)||(47327942-47328040)
chr7 (160-248)||(47327797-47327885)
[»] chr2 (11 HSPs)
chr2 (1-248)||(14096252-14096499)
chr2 (1-116)||(18977085-18977200)
chr2 (1-103)||(14810089-14810191)
chr2 (1-103)||(15330735-15330837)
chr2 (1-103)||(37261671-37261773)
chr2 (157-249)||(18977216-18977308)
chr2 (1-103)||(16429864-16429966)
chr2 (1-103)||(17690604-17690706)
chr2 (5-103)||(37078947-37079045)
chr2 (50-103)||(7089225-7089278)
chr2 (50-103)||(33755093-33755146)
[»] chr8 (7 HSPs)
chr8 (29-248)||(13802682-13802901)
chr8 (29-151)||(23613576-23613699)
chr8 (29-95)||(23614272-23614338)
chr8 (1-103)||(531684-531786)
chr8 (26-103)||(30945452-30945527)
chr8 (50-103)||(3879490-3879543)
chr8 (159-249)||(3879600-3879690)
[»] scaffold0166 (1 HSPs)
scaffold0166 (1-103)||(30681-30783)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 347 - 661
Target Start/End: Original strand, 30414015 - 30414329
Alignment:
Q  347 gtagagaaaggaacttcaataatttaaatttaaaccgattagaactcgtgtattagagagtgtcttaatagtataatttgttacggtaaatatattataa 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30414015 gtagagaaaggaacttcaataatttaaatttaaaccgattagaactcgtgtattagagagtgtcttaatagtataattcgttacggtaaatatattataa 30414114  T
Q  447 agagtatgtgttaaaatgtgtgctcctagtataattttatattgtacttcacatccttagaggaaatatggtgatttggttaatattggtctaaaaattg 546  Q
    |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||     
T  30414115 agagtacgtgttaaaatgtgtgttcctagcataattttatattgtacttcacatccttagaggaaatatgctgatttggttaatattgatctaaaaatta 30414214  T
Q  547 ctatgaaaaattgaataagtaaattccactacacatgtttattttttcttaattttactaaaccaacatcaatcaagtcactctctcatacgtgaagaat 646  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30414215 ctatgaaaaactgaataagtaaattccactacacatgtttattttttcttaattttactaaaccaacatcaatcaaatcactctctcatacgtgaagaat 30414314  T
Q  647 caaagggttgtgagt 661  Q
    |||||||||||||||    
T  30414315 caaagggttgtgagt 30414329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 27293189 - 27292940
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27293189 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 27293090  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||| |||||||||    
T  27293089 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtgtcatggcttgaaatctgattggctgaattaaa 27292990  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctcccta 250  Q
    |||||||||  ||||||||||||   ||||||||||||||||||||||||    
T  27292989 cgacttcaccgaaaaagtcaattccccgacttcttcatagaagctcccta 27292940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4919257 - 4919008
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  4919257 aaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaaccattaagatcttgaaat 4919158  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||    
T  4919157 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaatt-aa 4919059  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccctat 251  Q
    |||||||||  ||||||||||||   |||||||||||||||||||||||||    
T  4919058 cgacttcaccgaaaaagtcaattccccgacttcttcatagaagctccctat 4919008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 42976573 - 42976325
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| |||||||||  |  | ||||||||||||||| ||| ||||||||||| |||||||||||||||  ||||||||||||||||||| | |||     
T  42976573 aaagaggagagagaattgatactagaagaaaaatcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcataaaag 42976474  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||| || |||| |||||||||||||||||||||||| |  | |||| |||||||||||  ||| ||||||||||||||||||||||    
T  42976473 aaacttgtctatggtgggacttatggagcaagtgatccatattaaaattt-attctacatgtgacgtgtcatctcttgaaatctgattggttgaattaaa 42976375  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctcccta 250  Q
    ||||| ||   || ||||||||| | ||||||||||||||||||||||||    
T  42976374 cgactgcatcgaagaagtcaattgtccgacttcttcatagaagctcccta 42976325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 45989609 - 45989676
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 93  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||||||  |||||||||||||||||||    
T  45989609 aagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatc 45989676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 20133487 - 20133410
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| |||||||||    
T  20133487 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 20133410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 24228273 - 24228369
Alignment:
Q  156 aacatctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccctatt 252  Q
    |||||||||||||||||||||| |||||||||||||  | | ||||||||||||  || |||||| ||   ||||||| ||||||||||||||||||    
T  24228273 aacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccctatt 24228369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 30413916 - 30413960
Alignment:
Q  249 tattctttattggtccataatattaatagtgatcgtgtggtgtgg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30413916 tattctttattggtccataatattaatagtgatcgtgtggtgtgg 30413960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 42069020 - 42069112
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 93  Q
    |||||||| | ||||||| ||  | ||||||||||||||| ||| ||| ||||||||||||||||||| |||  |||||||||||||||||||    
T  42069020 aaagaggagaaagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatc 42069112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 55919361 - 55919463
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||  |||| ||| ||||||    
T  55919361 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaaat 55919460  T
Q  101 aaa 103  Q
    |||    
T  55919461 aaa 55919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 47031458 - 47031525
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 93  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||| |||  |||||||||| ||||||||    
T  47031458 aagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatc 47031525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 15531344 - 15531434
Alignment:
Q  159 atctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccct 249  Q
    ||||||||| ||||  ||| |||||||||||||| | | ||||||||||||| ||||||||| ||||  ||||||| | ||||||||||||    
T  15531344 atctgacgtatcatcacttgaaatctgattggttcattcaaacgacttcactgaaaaagtcatttttctgacttctccgtagaagctccct 15531434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 15531216 - 15531287
Alignment:
Q  32 aatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||| |||  || |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  15531216 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 15531287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28679610 - 28679508
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||| ||||||||||||||||||| |||  |||| ||||  |||||||| | ||||    
T  28679610 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcataaaat 28679511  T
Q  101 aaa 103  Q
    |||    
T  28679510 aaa 28679508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 12938885 - 12938643
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12938885 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaat 12938786  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  12938785 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgtcccaacatctgacgtgtcatcgcttaaaatctgattggttgaattaaa 12938686  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaag 243  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  12938685 cgacttcactaaaaaagtcaatttctcgacttcttcatagaag 12938643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33695023 - 33694802
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    ||||| || |||||| |||||  |||||||||||||| || ||||||||||||||||||| |||||| ||||| ||||||||| ||||||||| ||||||    
T  33695023 aaagaagagagagaaatggaattataagaaaaatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaactgttaagatcatgaaat 33694924  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||| ||||||||| ||||||||||| ||||||||||||||||||||||||   |||  |||| |||||||||  |||||||||||||||||  | | |||    
T  33694923 aaatttgtctatgatggaacatatggagcaagtgatccatattaaaattt-ttccattatctaacgtgtcatcacttaaaatctgattggtccattcaaa 33694825  T
Q  201 cgacttcactaaaaaagtcaatt 223  Q
    |||||||||  ||||||||||||    
T  33694824 cgacttcaccgaaaaagtcaatt 33694802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 28138039 - 28138217
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 125  Q
    ||||||||||||||| ||| |  |||||||||||| |||||||||||  |||||||||| |||||||| ||||||||||||||| ||| ||| |||||||    
T  28138039 aagaaaaatcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatgatgggacatatg 28138138  T
Q  126 aagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaacgact 205  Q
     |||||||| ||||||||||||||||  || ||||||||||||||||| ||| |||| ||||||| ||||||||||||||    
T  28138139 gagcaagtggtccatattaaaatttg-tcctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 28138217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 14532051 - 14532115
Alignment:
Q  69 ccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagt 133  Q
    |||||||||||||||| |||||||| |||| ||||| |||| |||||| |||||||  |||||||    
T  14532051 ccaaacaaatctaaccattaagatcgtgaagtaaacctgtccatggtgaaacatatagagcaagt 14532115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 12466481 - 12466398
Alignment:
Q  163 gacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctc 246  Q
    ||||||| ||| ||| |||| |||||||||||||||||||||| |||  |||||||| ||||  | ||||| | ||||||||||    
T  12466481 gacgtgttatgacttgaaatttgattggttgaattaaacgactgcaccgaaaaagtctatttcccaacttcatgatagaagctc 12466398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 220; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 30625107 - 30624856
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  30625107 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaaaattttgaaat 30625008  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  30625007 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttatcccaacatctgacgtgtcatgacttgaaatctgattggttgaattaaa 30624908  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccctatt 252  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30624907 cgacttcactaaaaaagtcaatttctcgacttcttcatagaagctccctatt 30624856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 41413417 - 41413664
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||| ||||||  ||||||||||||||||| | ||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||    
T  41413417 aaagaggaaagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 41413516  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||| | |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||| |||||||||||||  | | |||    
T  41413517 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 41413616  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccc 248  Q
    |||||||||  || |||||| ||   ||||||| ||||||||||||||    
T  41413617 cgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 41413664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1828655 - 1828408
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||| | ||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||    
T  1828655 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 1828556  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||| | |||||||||||||||||||||||||||||||| |||||| |  |||||||||||||||||||||| |||||||||||||  | | |||    
T  1828555 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcataacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 1828456  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccc 248  Q
    |||||||||  || |||||| ||   ||||||| ||||||||||||||    
T  1828455 cgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 1828408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 40314120 - 40313873
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||| | ||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||    
T  40314120 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 40314021  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||| | |||||||||||||||||||||||||||||||  |||||| || |||||||||||||||||||||| |||||||||||||  | | |||    
T  40314020 aaacttgtccacggtggaacatatgaagcaagtgatccatattgtaatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 40313921  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccc 248  Q
    |||||||||  || |||||| ||   ||||||| ||||||||||||||    
T  40313920 cgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 40313873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 31482071 - 31482292
Alignment:
Q  29 aaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaag 128  Q
    |||||| ||||| ||| ||||||||| |||| |||||||||||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| ||    
T  31482071 aaaaattatgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 31482170  T
Q  129 caagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcg 228  Q
    |||||||||||||||| |||||| ||  || ||||| |||||||  |||||||| ||||||| | | | ||||||||| ||  || |||||| |||   |    
T  31482171 caagtgatccatattataatttgtccttacttctgaagtgtcatcacttaaaatttgattggctcattcaaacgactttaccgaagaagtcattttactg 31482270  T
Q  229 acttcttcatagaagctcccta 250  Q
    |||||||| |||||||||||||    
T  31482271 acttcttcgtagaagctcccta 31482292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24788298 - 24788400
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| | ||||    
T  24788298 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaat 24788397  T
Q  101 aaa 103  Q
    |||    
T  24788398 aaa 24788400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 39884749 - 39884696
Alignment:
Q  50 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  39884749 taccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 39884696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 39884639 - 39884549
Alignment:
Q  159 atctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccct 249  Q
    ||||||||||||||  ||| |||||||||||||  | | ||||||||||||  ||||||||| ||||  ||||||| | ||||| ||||||    
T  39884639 atctgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttctccgtagaaactccct 39884549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 27286407 - 27286160
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27286407 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaat 27286308  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  27286307 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaaattttcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaa 27286208  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccc 248  Q
    |||||||||  ||||||||||||  |||||||||||||||||||||||    
T  27286207 cgacttcaccgaaaaagtcaattcctcgacttcttcatagaagctccc 27286160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 52385788 - 52386036
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  52385788 aaagaggaaagagaattggaaaagtaagaaaaatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgtaaagatcttgaaat 52385887  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||||||||||||| || ||||||||| ||| |||||| |||||||| ||| |||||||||||| |||||||||||| |||||||||    
T  52385888 aaacttgtctatggtggaacatatgaaacacgtgatccattttagaatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 52385987  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccct 249  Q
    |||||||||  |||||||||||||  | |||||||||||||||||||||    
T  52385988 cgacttcaccgaaaaagtcaatttcccaacttcttcatagaagctccct 52386036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 39241773 - 39241614
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 125  Q
    ||||||||||||||| ||| ||||||||||||||||| |||   ||   ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39241773 aagaaaaatcatgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatgaaataaacttgtctatggtggaacatatg 39241677  T
Q  126 aagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattg 189  Q
    ||||||||||| ||||||| |||||| | ||||||||||||||| ||  |||||||||||||||    
T  39241676 aagcaagtgat-catattagaatttgtctcaacatctgacgtgttatcacttaaaatctgattg 39241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12981623 - 12981521
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  12981623 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 12981524  T
Q  101 aaa 103  Q
    |||    
T  12981523 aaa 12981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45348242 - 45348344
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  45348242 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 45348341  T
Q  101 aaa 103  Q
    |||    
T  45348342 aaa 45348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 45325635 - 45325701
Alignment:
Q  27 agaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 93  Q
    |||||||||||||| ||| ||| |||||||||||||||||||| ||  |||||||||||||||||||    
T  45325635 agaaaaatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatc 45325701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 50650366 - 50650613
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50650366 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 50650465  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  50650466 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaa 50650565  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccc 248  Q
    |||||| ||  ||||||||||||   ||||||||||||||||||||||    
T  50650566 cgactttaccgaaaaagtcaattccccgacttcttcatagaagctccc 50650613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 12938644 - 12938396
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||| | ||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||    
T  12938644 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 12938545  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||| | |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||| |||||||||||||  | | |||    
T  12938544 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 12938445  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccct 249  Q
    |||||||||  || |||||| ||   ||||||| |||||||||||||||    
T  12938444 cgacttcaccgaagaagtcatttacccgacttcatcatagaagctccct 12938396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 31658794 - 31659038
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| |||||||||  |  | ||||||||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||| | |||     
T  31658794 aaagaggagagagaattgatattagaagaaaaatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcataaaag 31658893  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||| || |||| |||||||||||||||||| ||||| | || |||| ||| |||||||  ||| ||||||||||||||||||||||    
T  31658894 aaacttgtctatggtgggacttatggagcaagtgatccatattagaattt-atcctacatgtgatgtgtcatctcttgaaatctgattggttgaattaaa 31658992  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctc 246  Q
    ||||| |||  || ||||||||| ||| |||| |||||||||||||    
T  31658993 cgactgcaccgaagaagtcaattgttcaactttttcatagaagctc 31659038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 36 - 249
Target Start/End: Complemental strand, 29833483 - 29833270
Alignment:
Q  36 atgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagtga 135  Q
    ||||| ||| ||||||||| |||| |||||| ||||||||||||||||| |||||||| | || ||||  |||||||||||||||||||| |||||||||    
T  29833483 atgtgaagatggtgtaccataataccatagaaaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggagcaagtga 29833384  T
Q  136 tccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttctt 235  Q
    ||||||||| |||||| ||  || |||||||||||||  |||||||||||||||||| | | |||||||||||| ||| |||||| |||   ||||||||    
T  29833383 tccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgacttcaccaaagaagtcattttactgacttctt 29833284  T
Q  236 catagaagctccct 249  Q
    | ||||||||||||    
T  29833283 cgtagaagctccct 29833270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 48 - 249
Target Start/End: Original strand, 33216676 - 33216877
Alignment:
Q  48 tgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaa 147  Q
    ||||||| |||| ||||||| |||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| |||||||||||||||||| ||    
T  33216676 tgtaccataataccatagaggccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataa 33216775  T
Q  148 tttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctcc 247  Q
    |||| |   || |  ||||||||||  |||||||||||||||| | | | ||||||||||||  || |||||| |||   |||||| || ||||||||||    
T  33216776 tttgtcattacttaggacgtgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaagaagtcattttaatgacttcatcgtagaagctcc 33216875  T
Q  248 ct 249  Q
    ||    
T  33216876 ct 33216877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 39833230 - 39833307
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| |||||||||    
T  39833230 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 39833307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 36950181 - 36950234
Alignment:
Q  50 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||||||||||||||||||||||  |||||||||| |||||||| |||||||||    
T  36950181 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 36950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 29703541 - 29703612
Alignment:
Q  32 aatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||| |||  || |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  29703541 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 29703612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 5233044 - 5232946
Alignment:
Q  5 aggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||| |||||||||| |  | ||||||| ||||||| ||| | ||||||||||||||||| ||| |||  |||||||||  |||||||| |||||||||    
T  5233044 aggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 5232946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 20104420 - 20104322
Alignment:
Q  5 aggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||| |||||||||| |  | ||||||| | ||||| ||| | ||||||||||||||||| ||| |||  |||||||||| |||||||| |||||||||    
T  20104420 aggagagagaattggtactagaagaaaattaatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaaccattaagatcatgaaataaa 20104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 53282237 - 53282147
Alignment:
Q  159 atctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccct 249  Q
    ||||||||||||||  ||| ||||||||||||   | | ||||||||||||  || |||||| ||||  ||||||||||||||||||||||    
T  53282237 atctgacgtgtcatcacttgaaatctgattggcccattcaaacgacttcaccgaagaagtcatttttctgacttcttcatagaagctccct 53282147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 53282365 - 53282294
Alignment:
Q  32 aatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||| |||  || |||||||||||||||||||| ||  |||||||||| |||||||  |||||||||    
T  53282365 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagataatgaaataaa 53282294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 29703673 - 29703759
Alignment:
Q  163 gacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccct 249  Q
    ||||||||||  ||| |||||||||||||  | | ||||||||||||  ||||||||| ||||  ||||||| | ||||||||||||    
T  29703673 gacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttctccgtagaagctccct 29703759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 36950291 - 36950380
Alignment:
Q  159 atctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccc 248  Q
    ||||||||||||||  ||| |||||| |||||   | | ||||||||||||  ||||||||  ||||  |||||||||||||||||||||    
T  36950291 atctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaagctccc 36950380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 20104265 - 20104177
Alignment:
Q  160 tctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccc 248  Q
    |||||||||||||  ||||||||||||||||   | | |||||| |||||  ||||||||| |||   ||||||||| |||||||||||    
T  20104265 tctgacgtgtcatcacttaaaatctgattggcctattcaaacgatttcaccgaaaaagtcattttcctgacttcttcgtagaagctccc 20104177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 29833919 - 29834167
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29833919 aaagaggaaagagaattggaaaaataagtaaaatcatgtgcagagggtttaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaat 29834018  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  29834019 aaacttgtctatggtggaacatatgaagcaagtgatccatattagagtttgtcccaacatctgacatgtcatggcttgaaatctgattggctgaattaaa 29834118  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccct 249  Q
    |||||| || |||||||||||||   |||||||||| ||||||||||||    
T  29834119 cgactttaccaaaaaagtcaattccccgacttcttcgtagaagctccct 29834167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 19436915 - 19436667
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19436915 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaat 19436816  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| |||||| ||||||||| |||||||||||| |||||||||    
T  19436815 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtatcatggcttgaaatctgattggctgaattaaa 19436716  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccct 249  Q
    |||||||||  |||||||| |||   | ||||||||||| |||||||||    
T  19436715 cgacttcaccgaaaaagtctattccccaacttcttcataaaagctccct 19436667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 45972525 - 45972423
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  45972525 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 45972426  T
Q  101 aaa 103  Q
    |||    
T  45972425 aaa 45972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 29258556 - 29258441
Alignment:
Q  75 aaatctaaccgttaa-gatcttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatg 173  Q
    ||||||||||||||| |||  ||||||||||||||| | ||||||||| ||| |||||||||||||| ||| ||||||  |||  ||||||||||||||     
T  29258556 aaatctaaccgttaaagattatgaaataaacttgtccacggtggaacacatggagcaagtgatccatgttagaatttg-tccattatctgacgtgtcatc 29258458  T
Q  174 gcttaaaatctgattgg 190  Q
     ||| ||||||||||||    
T  29258457 acttgaaatctgattgg 29258441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 6442703 - 6442636
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatc 93  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||||||  ||||||||| |||||||||    
T  6442703 aagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatc 6442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 34094184 - 34094118
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagat 92  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||| |||  ||||||||||||||||||    
T  34094184 aagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagat 34094118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 29243455 - 29243380
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||| ||| ||||||||||||||  ||||||| |||  |||||||||| |||||||| |||||||||    
T  29243455 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 29243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 47328040 - 47327942
Alignment:
Q  5 aggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||| |||||||||| |  | ||||||| ||||||| ||| | ||||||||||||||||| ||| |||  |||||||||  |||||||| |||||||||    
T  47328040 aggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 47327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 47327885 - 47327797
Alignment:
Q  160 tctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccc 248  Q
    ||||||||||||| |||||||||||||||||   | | | ||||||||||  || |||||| |||   ||||||||| |||||||||||    
T  47327885 tctgacgtgtcatcgcttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagctccc 47327797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 3e-99; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 14096499 - 14096252
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  14096499 aaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacggttaagatcttgaaat 14096400  T
Q  101 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||| |||||||||    
T  14096399 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgtcttgaaatctgattggctgaattaaa 14096300  T
Q  201 cgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccc 248  Q
    |||||||||  ||||||||||||   ||||||||||||||||||||||    
T  14096299 cgacttcaccgaaaaagtcaattccccgacttcttcatagaagctccc 14096252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 18977085 - 18977200
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||| | ||||| ||| |||||||||||||||||||||||| ||  ||||||||| ||||||||| ||||||    
T  18977085 aaagaggagagataattggtactagaagaaaagttatgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaaat 18977184  T
Q  101 aaacttgtctatggtg 116  Q
    ||||||||| ||||||    
T  18977185 aaacttgtccatggtg 18977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 14810089 - 14810191
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||| |||| ||| ||||||    
T  14810089 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaaat 14810188  T
Q  101 aaa 103  Q
    |||    
T  14810189 aaa 14810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 15330837 - 15330735
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  15330837 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 15330738  T
Q  101 aaa 103  Q
    |||    
T  15330737 aaa 15330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 37261671 - 37261773
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  37261671 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 37261770  T
Q  101 aaa 103  Q
    |||    
T  37261771 aaa 37261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 18977216 - 18977308
Alignment:
Q  157 acatctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccct 249  Q
    |||| |||||||||||  |||||||||||||||| |||||||||||||||||   || |||||| |||   ||||||||||||||||||||||    
T  18977216 acatgtgacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaagaagtcattttcctgacttcttcatagaagctccct 18977308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 16429966 - 16429864
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||| ||||||||||||| |||  |||||||||| |||| ||| ||||||    
T  16429966 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaaat 16429867  T
Q  101 aaa 103  Q
    |||    
T  16429866 aaa 16429864  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 17690706 - 17690604
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| | ||||    
T  17690706 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaat 17690607  T
Q  101 aaa 103  Q
    |||    
T  17690606 aaa 17690604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 37079045 - 37078947
Alignment:
Q  5 aggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||| |||||||||| |  | ||||||| ||||||| ||| | ||||||||||||||||| ||| |||  |||||||||  |||||||| |||||||||    
T  37079045 aggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 37078947  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 7089278 - 7089225
Alignment:
Q  50 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||||||| |||  |||||||||| |||||||| |||||||||    
T  7089278 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 7089225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 33755093 - 33755146
Alignment:
Q  50 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||| |||||||  |||||||||| |||| ||| |||||||||    
T  33755093 taccacaataacatatagaccaagtaaatctaaccattaatatcatgaaataaa 33755146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 13802682 - 13802901
Alignment:
Q  29 aaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaag 128  Q
    |||||| ||||| ||| ||||||||| ||||  ||||||||||||||||||||||| |||||||| | || ||||  |||||||||||||||||||| ||    
T  13802682 aaaaattatgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggag 13802781  T
Q  129 caagtgatccatattaaaatttgacccaacatctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcg 228  Q
    |||||||||||||||| |||||| ||  || |||||||||||||  |||||||||||||||||| | | ||||||||| ||  ||||||||| |||   |    
T  13802782 caagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgactttaccgaaaaagtcattttactg 13802881  T
Q  229 acttcttcatagaagctccc 248  Q
    |||||||| |||||||||||    
T  13802882 acttcttcgtagaagctccc 13802901  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 23613699 - 23613576
Alignment:
Q  29 aaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatctt-gaaataaacttgtctatggtggaacatatgaa 127  Q
    |||||||||||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||||||  ||| ||| || || ||||||||||||||  |    
T  23613699 aaaaatcatgtgtagaggctgtaccacaatatcatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaagttatccatggtggaacatattga 23613600  T
Q  128 gcaagtgatccatattaaaatttg 151  Q
    ||||||| ||||||||| ||||||    
T  23613599 gcaagtggtccatattagaatttg 23613576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 23614338 - 23614272
Alignment:
Q  29 aaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatctt 95  Q
    |||||||||||| ||||||||| ||||||||  || |||||||||||||||||||||||||||||||    
T  23614338 aaaaatcatgtgtagagggtgtgccacaatattatggagaccaaacaaatctaaccgttaagatctt 23614272  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 531786 - 531684
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||  ||||||    
T  531786 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaaat 531687  T
Q  101 aaa 103  Q
    |||    
T  531686 aaa 531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 30945452 - 30945527
Alignment:
Q  26 aagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    ||||||||||||||| ||| ||||||||||||||  ||||||| |||  |||||||||| |||||||| |||||||||    
T  30945452 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 30945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 3879490 - 3879543
Alignment:
Q  50 taccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 103  Q
    |||||||||||||||||||||||  |||||||||| |||||||| |||||||||    
T  3879490 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 3879543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 3879600 - 3879690
Alignment:
Q  159 atctgacgtgtcatggcttaaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttttcgacttcttcatagaagctccct 249  Q
    ||||||||||||||  ||| |||||| ||||| | | | ||||||||||||  ||||||||  ||||  ||||||||| ||||||||||||    
T  3879600 atctgacgtgtcatcacttgaaatctaattggctcattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcgtagaagctccct 3879690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 30681 - 30783
Alignment:
Q  1 aaagaggaaagagaattggaaaaataagaaaaatcatgtgcagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 100  Q
    |||||||| ||| |||||| |  | ||||||||||||||| ||| ||||||||||||||||||||||| |||  |||||||||| |||| ||| | ||||    
T  30681 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaat 30780  T
Q  101 aaa 103  Q
    |||    
T  30781 aaa 30783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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