View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2140_high_8 (Length: 451)
Name: NF2140_high_8
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2140_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 30666188 - 30666336
Alignment:
| Q |
19 |
atagtgactagtgagtttagcggaaacacagtgtgtcacttcattttgtcgaaagctaaactttggaatttcaaacaaaatcacatactgtgatttcacc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30666188 |
atagtgactagtgagtttagcggaaacacagtgtgtcacttgattttttcgaaagctaaactttggaatttcaaacaaaatcacatactgtgatttcacc |
30666287 |
T |
|
| Q |
119 |
aaactcaccaccaactcaaagatgcatttattggtgatgtgttgattaa |
167 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30666288 |
aaactcaccaccaactcaaagatgcatttgttggtgatgtgttgattaa |
30666336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 313 - 441
Target Start/End: Original strand, 30666482 - 30666610
Alignment:
| Q |
313 |
ataatgcaaaacttgagtatctttatttgtggctatgtttcaggtatatatgtaagcatgcttgttgttacttccctgtcacgcttcatgtagaggatat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30666482 |
ataatgcaaaacttgagtatctttatttgtggctatgtttcaggtatatatgtaagcatgcttgtagttacttccctgtcacgcttcatgtagaggatat |
30666581 |
T |
|
| Q |
413 |
aaaggctttccatccaaatcgtgcctatg |
441 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
30666582 |
aaaggctttccatccaaatcgtgcttatg |
30666610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 30666389 - 30666442
Alignment:
| Q |
220 |
atggtgattcctattgatgaaaagagcttattcggtcgaaaattagcaaggtac |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
30666389 |
atggtgattcctattgatgaaaagagcttatttggtcgaaaattagccaggtac |
30666442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 441
Target Start/End: Complemental strand, 10114224 - 10114133
Alignment:
| Q |
350 |
tttcaggtatatatgtaagcatgcttgttgttacttccctgtcacgcttcatgtagaggatataaaggctttccatccaaatcgtgcctatg |
441 |
Q |
| |
|
||||||||| ||||| |||||||| ||| ||||||| || | ||||||||||||||||||||||| || || |||| |||||||| |||| |
|
|
| T |
10114224 |
tttcaggtacatatgcaagcatgcgtgtagttactttccgattacgcttcatgtagaggatataaaagcatttgatcctaatcgtgcttatg |
10114133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University