View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2140_low_10 (Length: 406)
Name: NF2140_low_10
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2140_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 42561049 - 42561420
Alignment:
| Q |
19 |
aggcctagcattaaagccagcatcattattaacggtttcagccgccgttaactcggctgcagcagtggcagcactgcggatatcatcgggtgaattggag |
118 |
Q |
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||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| || |
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| T |
42561049 |
aggcctaccatttaagccagcatcattattaacggcttcagccgccgttaactcagctgcagctgtggcagcactgcggatatcatctggtgaattagac |
42561148 |
T |
|
| Q |
119 |
gcaggcaccgggtacttgctagctgaattagggaagtttagaacagcgtccccgcctttgagagccaaagccgcgacatcataagccgtggctgccatct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
42561149 |
gcaggcaccgggtacttgctagctgaattagggaagtttagaacagcatccccgcctttgagggccaaagtcgcgacatcataagccgcggctgccatct |
42561248 |
T |
|
| Q |
219 |
caggggtagggaatgtgcctagccatatgcggttggtcttacgaggctcgcggatttcagtcacccattttcctcctcggctcctaattccgtggtatgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42561249 |
caggggtagggaatgtgcctagccatatgcggttggtcttacgaggctcgcggatttcagtcacccattttcctcctcggctcctaattccgtggtatgt |
42561348 |
T |
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| Q |
319 |
tgggtgtcttttggaagaagaagatgatgaagaagccatacttgttagaattaatgaaacttataattgcta |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42561349 |
tgggtgtcttttggaagaagaagatgatgaagaagccatacttgttagaattaatgaaacttataattgcta |
42561420 |
T |
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