View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2140_low_11 (Length: 404)

Name: NF2140_low_11
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2140_low_11
NF2140_low_11
[»] chr7 (2 HSPs)
chr7 (1-390)||(25837688-25838077)
chr7 (101-212)||(32348286-32348397)
[»] chr3 (5 HSPs)
chr3 (121-238)||(486526-486643)
chr3 (121-212)||(553571-553662)
chr3 (121-208)||(573407-573494)
chr3 (143-233)||(541354-541444)
chr3 (122-212)||(563674-563764)
[»] chr1 (4 HSPs)
chr1 (122-246)||(47987404-47987528)
chr1 (127-212)||(45195922-45196007)
chr1 (122-249)||(49441190-49441318)
chr1 (146-238)||(49541327-49541419)
[»] chr4 (2 HSPs)
chr4 (127-209)||(55773130-55773212)
chr4 (127-209)||(55837341-55837423)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 25838077 - 25837688
Alignment:
Q  1 ttttatcatactaagcctatgttctgatttctgaaatcgcctaataatgtaattgttgtgaattgatacacaggggaaaaaatggtaatggaagcacagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25838077 ttttatcatactaagcctatgttctgatttctgaaatcgcctaataatgtaattgttgtgaattgatacacaggagaaaaaatggtaatggaagcacagg 25837978  T
Q  101 actgtcaacttcctccagaaatgctagatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25837977 actgtcaacttcctccagaaatgctagatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggaatt 25837878  T
Q  201 tcataaaatttactgcataaattttctggcatcccaagcacctttaattttccaaacatcttcatattctaaggatgattattctttctatagcatacca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25837877 tcataaaatttactgcataaattttctggcatcccaagcacctttaattttccaaacatcttcatattctaaggatgattattctttctatagcatacca 25837778  T
Q  301 aaccaaagagcttaccgcttgaagatgggtaacttatggggatattcctattccgggtcttctagtggttatctaattatggccggtgat 390  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25837777 aaccaaagagcttaccgcttgaagatgggtagcttatggggatattcctattccgggtcttctagtggttatctaattatggccggtgat 25837688  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 32348397 - 32348286
Alignment:
Q  101 actgtcaacttcctccagaaatgctagatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatt 200  Q
    ||||||||||||||   ||  |||| |||||||||||| | |  |||||||||||||| | |||||| ||||| || || |||||||  |||||||| ||    
T  32348397 actgtcaacttcctatggatgtgcttgatatcatttccgaaacactagatttcgatgaccactttcagtttgccggtgtgtgcaagaattggagggcttt 32348298  T
Q  201 tcataaaattta 212  Q
    ||||||||||||    
T  32348297 tcataaaattta 32348286  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 486643 - 486526
Alignment:
Q  121 atgctagatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatttcataaaatttactgcataa 220  Q
    ||||| ||| |||||||||   |||||||||||||||| |||||||||||| ||||||| |||||||  |||||||  |||||||||| |||||| | ||    
T  486643 atgcttgatgtcatttccagagatctagatttcgatgacctctttcaattttctggcgtgtgcaagaattggagggagtttcataaaacttactggaaaa 486544  T
Q  221 attttctggcatcccaag 238  Q
    | ||  ||||||||||||    
T  486543 agttcttggcatcccaag 486526  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 553662 - 553571
Alignment:
Q  121 atgctagatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatttcataaaattta 212  Q
    ||||| ||| |||||||||   |||||||||||||||| ||||||||||| ||||| || |||||||  ||||||| |||||||||||||||    
T  553662 atgcttgatgtcatttccagagatctagatttcgatgacctctttcaattcgctggggtgtgcaagaattggagggaatttcataaaattta 553571  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 573494 - 573407
Alignment:
Q  121 atgctagatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatttcataaaa 208  Q
    ||||| ||| |||||||||   |||||||||||||||| ||||||||||| ||||| || |||||||  ||||||| |||||||||||    
T  573494 atgcttgatgtcatttccagagatctagatttcgatgacctctttcaattcgctggtgtgtgcaagaattggagggaatttcataaaa 573407  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 541444 - 541354
Alignment:
Q  143 atctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatttcataaaatttactgcataaattttctggcatc 233  Q
    |||||||||||||||| ||||||||||| ||||| || |||||||  ||||||| |||||| |||| ||| || | ||| ||| |||||||    
T  541444 atctagatttcgatgacctctttcaattcgctggtgtgtgcaagaattggagggaatttcaaaaaacttattggaaaaagtttttggcatc 541354  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 563764 - 563674
Alignment:
Q  122 tgctagatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatttcataaaattta 212  Q
    |||| ||||||||||| |  || |||||||| || || |||||| |||||||||| || |||||||  ||||||| |||||||||||||||    
T  563764 tgcttgatatcatttctagaaaactagattttgacgacctctttgaatttgctggtgtgtgcaagaattggagggaatttcataaaattta 563674  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 47987528 - 47987404
Alignment:
Q  122 tgctagatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatttcataaaatttactgcataaa 221  Q
    |||| |||||||||||||| |  |||||||| |  || | ||||||||||||||| || |||||||  |||||| ||||||||||||||||||  | |||    
T  47987528 tgcttgatatcatttccaaaacactagattttgtcgaccactttcaatttgctggtgtgtgcaagaattggaggacatttcataaaatttactcgagaaa 47987429  T
Q  222 ttttctggcatcccaagcaccttta 246  Q
    |||  |||||||||||| |||||||    
T  47987428 tttcttggcatcccaagaaccttta 47987404  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 45195922 - 45196007
Alignment:
Q  127 gatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatttcataaaattta 212  Q
    |||||||||| ||| | ||||||||| ||||| | |||||||||| | || ||||||||||  |||||||| ||||||||||||||    
T  45195922 gatatcattttcaaaactctagattttgatgaccactttcaattttccggtgtatgcaagaattggagggcttttcataaaattta 45196007  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 249
Target Start/End: Complemental strand, 49441318 - 49441190
Alignment:
Q  122 tgctagatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggaggg-catttcataaaatttactgcataa 220  Q
    |||| |||||||||||||| |  |||||||| || || |||||||| ||||| || || |||||||  ||||||| | |||| |||||||||||| | ||    
T  49441318 tgcttgatatcatttccaaaacactagattttgacgacctctttcagtttgccggtgtgtgcaagaattggaggggcttttcgtaaaatttactggagaa 49441219  T
Q  221 attttctggcatcccaagcacctttaatt 249  Q
    ||||  |||||||||||| ||| ||||||    
T  49441218 atttcttggcatcccaagaaccattaatt 49441190  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 49541419 - 49541327
Alignment:
Q  146 tagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatttcataaaatttactgcataaattttctggcatcccaag 238  Q
    ||||||| || || ||||||||||||| ||| || || ||||  |||||||| |||||||||||||| || | | ||||  ||||||||||||    
T  49541419 tagattttgacgacctctttcaatttgatggagtgtgtaagaattggagggcttttcataaaatttattggagagatttcttggcatcccaag 49541327  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 55773130 - 55773212
Alignment:
Q  127 gatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatttcataaaat 209  Q
    ||||||||||||||   |||||| || ||||||||||||||||||||| | || || ||||  ||||||||||||||||||||    
T  55773130 gatatcatttccaaatctctagactttgatgatctctttcaatttgcttgtgtgtgtaagaattggagggcatttcataaaat 55773212  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 55837341 - 55837423
Alignment:
Q  127 gatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggcatttcataaaat 209  Q
    ||||||||||||||   |||||| || ||||||||||||||||||||| | || || ||||  ||||||||||||||||||||    
T  55837341 gatatcatttccaaatctctagactttgatgatctctttcaatttgcttgtgtgtgtaagaattggagggcatttcataaaat 55837423  T

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