View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2140_low_12 (Length: 386)
Name: NF2140_low_12
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2140_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 248 - 376
Target Start/End: Complemental strand, 4284248 - 4284120
Alignment:
| Q |
248 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacggaaatcactgccgatctccctgttaaccaccgtcactctc |
347 |
Q |
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| T |
4284248 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacagaaatcactgccgatctccccgttaaccaccgtcactctc |
4284149 |
T |
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| Q |
348 |
tctattcctccggccacgtttgtttcatc |
376 |
Q |
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| T |
4284148 |
tctattcctccggccacgtttgtttcatc |
4284120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 4284469 - 4284361
Alignment:
| Q |
27 |
aatcaaatcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctagaagacac |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4284469 |
aatcaaatcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctagaagacac |
4284370 |
T |
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| Q |
127 |
caatggcgg |
135 |
Q |
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| T |
4284369 |
caatggcgg |
4284361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 8682321 - 8682280
Alignment:
| Q |
248 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaa |
289 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8682321 |
aaatccaaaatcaatttccatctcaaaaccctaaaccaccaa |
8682280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 6348737 - 6348776
Alignment:
| Q |
248 |
aaatccaaaatcaatttccatctcaaaaccctaaaccccc |
287 |
Q |
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| T |
6348737 |
aaatacaaaatcaatttgcatctcaaaaccctaaaccccc |
6348776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 23429478 - 23429422
Alignment:
| Q |
75 |
caatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatg |
131 |
Q |
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|||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |
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| T |
23429478 |
caatggttcttcaattccacacaaacataatcacttaacttctagaagacaccaatg |
23429422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 25978334 - 25978378
Alignment:
| Q |
332 |
aaccaccgtcactctctctattcctccggccacgtttgtttcatc |
376 |
Q |
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||||||| || |||||| ||||||||||||||| ||||||||||| |
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| T |
25978334 |
aaccaccatcgctctctatattcctccggccacatttgtttcatc |
25978378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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