View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2140_low_14 (Length: 367)
Name: NF2140_low_14
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2140_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 52118222 - 52118560
Alignment:
| Q |
20 |
ctgtacgtaccaaccaattatcaagttaattatttatggctaaattcgaattgcatggaattcttgcatacttgatccattattatttcaataatttcca |
119 |
Q |
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| T |
52118222 |
ctgtacgtaccaaccaattatcaagttaattatttatggctaaattcgaattgcatggaattcttgcatacttgatccattattatttcaataatttcca |
52118321 |
T |
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| Q |
120 |
cattccaaactaataattattatatataaattcgtagagcatgcgtatgtcaagttgtttaagtgtggacctgtctttgatgtacaaaataccaaaggaa |
219 |
Q |
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| T |
52118322 |
cattccaaactaataattattatatataaattcgtagagcatgcgtatgtcaagttgtttaagtgtggacctgtctttgatgtacaaaataccaaaggaa |
52118421 |
T |
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| Q |
220 |
ccatacacatatacatgtatgttaattatgcatgcataattagctggtgttgtggtccttggcttaagctataatgtgatgctgtttccacatgaacttg |
319 |
Q |
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| T |
52118422 |
ccatacacatatacatgtatgtta---atgcatgcataattagctggtgttgtggtccttggcttaagctataatgtgatgctgtttccacatgaacttg |
52118518 |
T |
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| Q |
320 |
caatgcatttataatcgtatagtacatgtcacaggttctgct |
361 |
Q |
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| T |
52118519 |
caatgcatttataatcgtatagtacatgtcacaggttgtgct |
52118560 |
T |
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