View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2140_low_19 (Length: 277)

Name: NF2140_low_19
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2140_low_19
NF2140_low_19
[»] chr3 (4 HSPs)
chr3 (1-267)||(1575522-1575788)
chr3 (12-73)||(27516304-27516365)
chr3 (12-73)||(4986993-4987054)
chr3 (65-110)||(40687008-40687053)
[»] chr5 (5 HSPs)
chr5 (165-267)||(2190699-2190793)
chr5 (12-73)||(29801656-29801717)
chr5 (64-110)||(26647764-26647810)
chr5 (64-110)||(26919349-26919395)
chr5 (12-73)||(38503512-38503573)
[»] chr6 (1 HSPs)
chr6 (65-110)||(10365011-10365056)
[»] chr7 (1 HSPs)
chr7 (65-109)||(40786342-40786386)
[»] chr4 (1 HSPs)
chr4 (12-56)||(22422737-22422781)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 1575522 - 1575788
Alignment:
Q  1 tatttaagagggggtgtatttggtttggaagaaaagttgagaatggagaaataggtaatagagaatgtgagaaataaagtatatttcatttattgtttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1575522 tatttaagagggggtgtatttggtttggaagaaaagttgagaatggagaaataggtaatagagaatgtgagaaataaagtatatttcatttattgtttgg 1575621  T
Q  101 tataagagaacggaagtgttgtgcagcacgagaccaaaggcaacgagtggaaatcatgtgatggagagttaaacatgggagagggaattcaattggttac 200  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1575622 tataagagaacggaagtgttgtacagcacgagatcaaaggtaacgagtggaaatcatgtgatggagagttaaacatgggagagggaattcaattggttac 1575721  T
Q  201 aggaaggaaggcataaataaaaattcaagggtggagattggttcgtcgcttctcgtgtgtgtatatt 267  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  1575722 aggaaggaaggcataaataaaaattcaagggtggagaatggttcgtcgcttctcgtgtgtgtgtatt 1575788  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 27516365 - 27516304
Alignment:
Q  12 gggtgtatttggtttggaagaaaagttgagaatggagaaataggtaatagagaatgtgagaa 73  Q
    |||||| |||||||||||||| ||||||||||  ||||||||||||| ||||| | ||||||    
T  27516365 gggtgtgtttggtttggaagagaagttgagaagagagaaataggtaagagagagtatgagaa 27516304  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 4987054 - 4986993
Alignment:
Q  12 gggtgtatttggtttggaagaaaagttgagaatggagaaataggtaatagagaatgtgagaa 73  Q
    |||||| |||||||||||||| ||||||||||  ||||| ||||||| ||||| | ||||||    
T  4987054 gggtgtgtttggtttggaagagaagttgagaagagagaagtaggtaagagagagtatgagaa 4986993  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 40687053 - 40687008
Alignment:
Q  65 atgtgagaaataaagtatatttcatttattgtttggtataagagaa 110  Q
    |||||||||||| |||| |||| || ||||||||||||||||||||    
T  40687053 atgtgagaaatatagtagatttgatgtattgtttggtataagagaa 40687008  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 2190793 - 2190699
Alignment:
Q  165 agagttaaacatgggagagggaattcaattggttacaggaaggaaggcataaataaaaattcaagggtggagattggttcgtcgcttctcgtgtgtgtat 264  Q
    ||||| ||||||||||||| |||||||||||||||||||||||        ||||||||| ||||||| | || ||||||||||||||||||| ||||||    
T  2190793 agagtaaaacatgggagagagaattcaattggttacaggaagg--------aataaaaatccaagggttgtgaatggttcgtcgcttctcgtgcgtgtat 2190702  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 29801656 - 29801717
Alignment:
Q  12 gggtgtatttggtttggaagaaaagttgagaatggagaaataggtaatagagaatgtgagaa 73  Q
    |||||| |||||||||||||||||||||||||  ||||| ||||||| ||||| | ||||||    
T  29801656 gggtgtgtttggtttggaagaaaagttgagaagagagaagtaggtaagagagagtatgagaa 29801717  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 26647810 - 26647764
Alignment:
Q  64 aatgtgagaaataaagtatatttcatttattgtttggtataagagaa 110  Q
    ||||||||||||||||||||||| ||  ||||||||||| |||||||    
T  26647810 aatgtgagaaataaagtatatttgatggattgtttggtagaagagaa 26647764  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 26919395 - 26919349
Alignment:
Q  64 aatgtgagaaataaagtatatttcatttattgtttggtataagagaa 110  Q
    ||||||||||||||||||||||| ||  ||||||||||| |||||||    
T  26919395 aatgtgagaaataaagtatatttgatggattgtttggtagaagagaa 26919349  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 38503512 - 38503573
Alignment:
Q  12 gggtgtatttggtttggaagaaaagttgagaatggagaaataggtaatagagaatgtgagaa 73  Q
    |||||| |||||||||||||| ||||||||||  ||||| ||||||| ||||| | ||||||    
T  38503512 gggtgtgtttggtttggaagagaagttgagaagagagaagtaggtaagagagagtatgagaa 38503573  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 10365011 - 10365056
Alignment:
Q  65 atgtgagaaataaagtatatttcatttattgtttggtataagagaa 110  Q
    ||||||||||||||||| |||| ||  |||||||||||||||||||    
T  10365011 atgtgagaaataaagtagatttgatggattgtttggtataagagaa 10365056  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 40786386 - 40786342
Alignment:
Q  65 atgtgagaaataaagtatatttcatttattgtttggtataagaga 109  Q
    |||||||||||| |||| |||| || |||||||||||||||||||    
T  40786386 atgtgagaaatagagtagatttgatgtattgtttggtataagaga 40786342  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 22422737 - 22422781
Alignment:
Q  12 gggtgtatttggtttggaagaaaagttgagaatggagaaataggt 56  Q
    |||||| ||||||||||||||||||||| |||  |||||||||||    
T  22422737 gggtgtgtttggtttggaagaaaagttgtgaagagagaaataggt 22422781  T

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