View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2140_low_2 (Length: 667)
Name: NF2140_low_2
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2140_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 344 - 651
Target Start/End: Original strand, 28464292 - 28464599
Alignment:
| Q |
344 |
acctaggaaataattttggataaaataaattagcataaaaaattatgagtttttaacaaaatggttcttgattttaaaattttagccattaataaaagat |
443 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28464292 |
acctaggaaataattttggataaaataaattaccataaaaaattatgagtttttaacaaaatggttcttgattttaaaattttagccattgataaaagat |
28464391 |
T |
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| Q |
444 |
caattgaatcatcaaatacaagtactgatagataaatgaattattattgtattatatgcagcttaaaatcattggatcaaggtgtgagtgtgagtgttgg |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
28464392 |
caattgaatcatcaaatacaagtactgatagataaatgaattattattgtattatatgcagcttaaaatcattggatcaaggggtgagtgtcagtgttgg |
28464491 |
T |
|
| Q |
544 |
tgagtcacttacagctggcaatgggacaacccgatggctctctccttcaagagattttgcatttgggttttaccaacttcctaatgcacttttcatgcta |
643 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28464492 |
tgagtcacttacagctggcaatgggacaacccgatggctctctccttcaagagattttgcatttgggttttaccaacttcctaatgcacttttcttgcta |
28464591 |
T |
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| Q |
644 |
gctatttg |
651 |
Q |
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|||||||| |
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| T |
28464592 |
gctatttg |
28464599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 28463954 - 28464228
Alignment:
| Q |
12 |
cgaagaatatggaaacatcctcatcaaaaaatgagtaactaaaaccctata--gtctttcttcaaccacgtgatacgaactcaatcgtctataccaagtg |
109 |
Q |
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| T |
28463954 |
cgaacaatatggaaacatcctcatcaaaaaatgagtaactaaaaccctataaagtctttcttcaaccacatgatacgaacccaatcgtctagaccaagtg |
28464053 |
T |
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| Q |
110 |
tatgcatggccttgcatcaagacatcagtaaggtcacagtgtggtgtggagagagcatcagttaatgtttaattaagaaatttattacatattataaaaa |
209 |
Q |
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| T |
28464054 |
tatgcatggccttgcatcaagacatcagtaaggtcacagtgtggtgtggagagagaatcggttaatgtttaattaagaaatttattacatattatagaaa |
28464153 |
T |
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| Q |
210 |
gtactctttccgtcccaaattataagtnnnnnnnnttgtctc--aattataagtcgctttacaatatcaatgaag |
282 |
Q |
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| T |
28464154 |
ctactctttccgtcccaaattataagtaaaaaaaattgtctcaaaattataagtcgctttacaatatcaatgaag |
28464228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 498 - 648
Target Start/End: Original strand, 28486220 - 28486370
Alignment:
| Q |
498 |
tatgcagcttaaaatcattggatcaaggtgtgagtgtgagtgttggtgagtcacttacagctggcaatgggacaacccgatggctctctccttcaagaga |
597 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||| |||||||| |||| |
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| T |
28486220 |
tatgcagcttagaatcattggatcaaggtgtgagtgtgagtgttggtgagtcacttactgctggaaatgagacaacacgatggctcactccttcaggaga |
28486319 |
T |
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| Q |
598 |
ttttgcatttgggttttaccaacttcctaatgcacttttcatgctagctat |
648 |
Q |
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| T |
28486320 |
ttttgcatttggattttaccaacttcctgatgatcttttcttgctagctat |
28486370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 498 - 648
Target Start/End: Original strand, 28443603 - 28443747
Alignment:
| Q |
498 |
tatgcagcttaaaatcattggatcaaggtgtgagtgtgagtgttggtgagtcacttacagctggcaatgggacaacccgatggctctctccttcaagaga |
597 |
Q |
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||||||||||| ||||||||||||||||||| | ||| |||||||||||||| ||||||| ||| ||||| || ||| ||||||||||| |||| |
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| T |
28443603 |
tatgcagcttagaatcattggatcaaggtgtaattgt------tggtgagtcacttattgctggcagtggcacaactcgttggttctctccttcaggaga |
28443696 |
T |
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| Q |
598 |
ttttgcatttgggttttaccaacttcctaatgcacttttcatgctagctat |
648 |
Q |
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|||| ||||||| ||||||||||||||||||| |||||| |||||||||| |
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| T |
28443697 |
tttttcatttggattttaccaacttcctaatgagcttttcttgctagctat |
28443747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 530 - 648
Target Start/End: Original strand, 28436396 - 28436514
Alignment:
| Q |
530 |
agtgtgagtgttggtgagtcacttacagctggcaatgggacaacccgatggctctctccttcaagagattttgcatttgggttttaccaacttcctaatg |
629 |
Q |
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||||||||| | ||||| ||||| || ||||| ||||||||||| || |||||||||||||| ||||||| |||||||| |||||||||||||| ||| |
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| T |
28436396 |
agtgtgagtctaggtgactcactcactgctggaaatgggacaactcgttggctctctccttcgggagatttcgcatttggattttaccaacttccaaatc |
28436495 |
T |
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| Q |
630 |
cacttttcatgctagctat |
648 |
Q |
| |
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|||||| |||||||||| |
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| T |
28436496 |
agcttttcttgctagctat |
28436514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 19713071 - 19713100
Alignment:
| Q |
252 |
aattataagtcgctttacaatatcaatgaa |
281 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
19713071 |
aattataagtcgctttacaatatcaatgaa |
19713100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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