View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2140_low_20 (Length: 262)
Name: NF2140_low_20
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2140_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 26735641 - 26735415
Alignment:
| Q |
17 |
tttgtttagaagtttgtttccatttgaaaagacgaaaaattaagaacagaatcaaagaggaccttaacctgcatttgtgaaacttatgttctgatttttc |
116 |
Q |
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| T |
26735641 |
tttgtttagaagtttgtttccatttgaaaagacgaaaaattaagaacagaatcaaagaggacattaacctgcatttgtgaaacttatgttctgatttttc |
26735542 |
T |
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| Q |
117 |
agctgtgctggtcgtgaatattgtgtgtgattgaaaggatttaagaggatttgcaagacgaattgttaattatatattcatacatgtaaacagagaaatt |
216 |
Q |
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| T |
26735541 |
agctgtgctggtcgtgaatat----tatgattgaaaggatttaagaggatttgcaagacgaattgttaattatatattcatacatgtaaacagagaaatt |
26735446 |
T |
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| Q |
217 |
atttccatctgaaaagatttcacattcatgt |
247 |
Q |
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| T |
26735445 |
atttccatctgaaaagatttcacgttcatgt |
26735415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 23438008 - 23437894
Alignment:
| Q |
24 |
agaagtttgtttccatttgaaaagacgaaaaattaagaacagaatcaaagaggaccttaacctgcatttgtgaaacttatgttctgatttttcagctgtg |
123 |
Q |
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||||||||||||||||||||| ||||||||||||||||| | || |||||||| |||||||||||||||||| ||||| |||||| |||||||| ||||| |
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| T |
23438008 |
agaagtttgtttccatttgaatagacgaaaaattaagaatacaaccaaagaggcccttaacctgcatttgtggaacttctgttctcatttttcacctgtg |
23437909 |
T |
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| Q |
124 |
ctggtcgtgaatatt |
138 |
Q |
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| T |
23437908 |
ctggttgtgaatatt |
23437894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 25906259 - 25906332
Alignment:
| Q |
162 |
aggatttgcaagacgaattgttaattatatattcatacatgtaaacag--agaaattatttccatctgaaaagatttc |
237 |
Q |
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| T |
25906259 |
aggatttgcaggacgaattgttgattat----tcttacatgtaaacagtgagaaattatttccatctgaaaaggtttc |
25906332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 40424683 - 40424610
Alignment:
| Q |
162 |
aggatttgcaagacgaattgttaattatatattcatacatgtaaacag--agaaattatttccatctgaaaagatttc |
237 |
Q |
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|||||||||| ||||||||||| ||||| || ||||||||||||| |||||||||||| |||||||||| |||| |
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| T |
40424683 |
aggatttgcaggacgaattgttgattat----tcttacatgtaaacagtgagaaattatttctatctgaaaaggtttc |
40424610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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