View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2140_low_5 (Length: 568)
Name: NF2140_low_5
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2140_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 14 - 553
Target Start/End: Original strand, 38483298 - 38483837
Alignment:
| Q |
14 |
gtaattacacttactggtgcagttacttgcatgttaagtcaagtgtctcgcttcctgatcttaaaaataataactctgatcatcgtcgtgagattctgta |
113 |
Q |
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| T |
38483298 |
gtaattacacttcctggtgcagttacttgcatgttaagtcaagtgtctcgcttcctgatcttaaaaataataactctgatcatcgtcgtgagattctgta |
38483397 |
T |
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| Q |
114 |
tgtttctctttatcttctcatttggggggagtctgcgaatttacgttttattcctgaatgtatttgctatatttttcatcatatggcaaatgatttaaat |
213 |
Q |
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||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38483398 |
tgtttctctttatctccttatttggggggaatctgcgaatttacgttttattcctgaatgtatttgctatatttttcatcatatgacaaatgatttaaat |
38483497 |
T |
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| Q |
214 |
aaaatcttgcggagtaagaaaaacaatgatcattatgattatgaaccgttctttcattcgcaatatggttttttaaacgatgttgtgaagccgatttata |
313 |
Q |
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| T |
38483498 |
aaaatcttgcggagtaagaaaaacaatgatcattatgattatgaaccgttctttcattcgcaatatggttttttaaacgatgttgtgaagccgatttata |
38483597 |
T |
|
| Q |
314 |
aaatggtgaagtttgaggctgagattaggagtggtaatggaacggaaccacatacgagatggagaaattatgatgatataaatgagtatttttggagtaa |
413 |
Q |
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| T |
38483598 |
aaatggtgaagtttgaggctgagattaggagtggtaatggaacggaaccacatacaagatggagaaattatgatgatataaatgagtatttttggagtaa |
38483697 |
T |
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| Q |
414 |
gaggtgttttgagaaattgaaatggcctattgatatcgggagtagttttttcgatggaaatcgtgttgggaagacaggttttgttgaacggaggtcgttt |
513 |
Q |
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| T |
38483698 |
gaggtgttttgagaaattgaaatggcctattgatattgggagtagttttttcgatggaaatcgtgttgggaagacgggttttgttgaacggaggtcgttt |
38483797 |
T |
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| Q |
514 |
tggaatttgtttaggagttttgataggctttggatgatgt |
553 |
Q |
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| T |
38483798 |
tggaatttgtttaggagttttgataggctttgggtgatgt |
38483837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 3682860 - 3682910
Alignment:
| Q |
372 |
atggagaaattatgatgatataaatgagtatttttggagtaagaggtgttt |
422 |
Q |
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| T |
3682860 |
atggaggaattatgatgatataaatgagtatttttggagtaggaggtgttt |
3682910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 373 - 464
Target Start/End: Original strand, 30118047 - 30118138
Alignment:
| Q |
373 |
tggagaaattatgatgatataaatgagtatttttggagtaagaggtgttttgagaaattgaaatggcctattgatatcgggagtagtttttt |
464 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |||| | ||||||| |||||| |
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| T |
30118047 |
tggagaaattatgatgatattaatgagtatttttggagtaggaggtgttttgagaagatgaaatggcctcctgatgttgggagtaatttttt |
30118138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 553
Target Start/End: Original strand, 30118163 - 30118239
Alignment:
| Q |
477 |
tgttgggaagacaggttttgttgaacggaggtcgttttggaatttgtttaggagttttgataggctttggatgatgt |
553 |
Q |
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|||||| ||||| || |||||||| | ||| |||||||||||| ||||| |||||||||| ||||||||||| |||| |
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| T |
30118163 |
tgttggtaagaccggatttgttgagcagagatcgttttggaatctgtttcggagttttgacaggctttggattatgt |
30118239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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