View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2140_low_9 (Length: 450)
Name: NF2140_low_9
Description: NF2140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2140_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 42577260 - 42576829
Alignment:
| Q |
17 |
atatgatcatagtaacggcgacgaaagtgaacataacgaacggaggagaatcgatatgaggtgtggttagtagttgaagttaacgcagacgctaaggagt |
116 |
Q |
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| T |
42577260 |
atatgatcatagtaacggcgacgaaagtgaacataacgaacggaggagaatcgatatgaggtgtggttagtagttgaagttaacgcagacgctaaggagt |
42577161 |
T |
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| Q |
117 |
ggctgaaacagagcaatgtaattatagcagc-taataactgttaaataatggtttaatggaagagaaacgtgattagt---gagaatgaaactaa---gt |
209 |
Q |
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| T |
42577160 |
ggctgaaacagagcaatgtaattatagcagaataataactgttaaataatggtttaatggaagagaaacgtgattagtagtgagaatgaaactaataagt |
42577061 |
T |
|
| Q |
210 |
aattaacctggaaataagatctcggcaactgcggagatgacggatggaagagagtcgagagggaatggaagaagtgtggtggttagcagatgtagctgat |
309 |
Q |
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| T |
42577060 |
aattaacctggaaataagatctcggcaactgcggagatgacagatggaagagagtcgagagggaatggaagaagtgaggtggttagcagatgtagctgat |
42576961 |
T |
|
| Q |
310 |
tccgccgccgccaaggaccgggtaatagaacgaagtgcgactctcgctgaattagatttccaactgctcgccattttcgtgatttggcattctgagacct |
409 |
Q |
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| T |
42576960 |
tccgccgccgccaaggaccgggtaatagaacgaagtgcaactctcgctgaattagatttccaaatgcttgccattttcgtgatttggcattctgagacct |
42576861 |
T |
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| Q |
410 |
tctctgcaacggaaacccctttttcttcatct |
441 |
Q |
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| T |
42576860 |
tctctgcaacggaaacccctttttcttcatct |
42576829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 334 - 441
Target Start/End: Complemental strand, 42569894 - 42569784
Alignment:
| Q |
334 |
atagaacgaagtgcgactctcgctgaattagatttccaactgctcgccattttcgt---gatttggcattctgagaccttctctgcaacggaaacccctt |
430 |
Q |
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|||||| |||||||| ||||||||||||| |||||||| || ||| ||||||||| ||||||| ||||||||||||||||| |||||||||||| || |
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| T |
42569894 |
atagaatgaagtgcggttctcgctgaattacatttccaaatgttcgtcattttcgtagtgatttggtattctgagaccttctctacaacggaaacccttt |
42569795 |
T |
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| Q |
431 |
tttcttcatct |
441 |
Q |
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|||||| |||| |
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| T |
42569794 |
tttctttatct |
42569784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 42569990 - 42569915
Alignment:
| Q |
213 |
taacctggaaataagatctcggcaactgcggagatgacggatggaagagagtcgagagggaatggaagaagtgtgg |
288 |
Q |
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||||||||| ||| |||||||| ||||||| |||||||||| || |||||||||||||||| |||| |||||||| |
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| T |
42569990 |
taacctggagatatgatctcggtaactgcgaagatgacggaccgaggagagtcgagagggaacggaaaaagtgtgg |
42569915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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