View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21410_high_1 (Length: 603)
Name: NF21410_high_1
Description: NF21410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21410_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 19 - 599
Target Start/End: Original strand, 38830713 - 38831290
Alignment:
| Q |
19 |
tctacatcaaatccttcatgacttccgagattctattcaaacgtcacagcagattcacaacgccactctacaaatacccgtcctcttgttacataaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38830713 |
tctacatcaaatccttcatgacttccgagattctattcaaacgtcacagcagattcacaacgccactctacaaatacccgtcctcttgttacataaattt |
38830812 |
T |
|
| Q |
119 |
ttcatagctcatt-ttctattattatacagtactaattaatcatgggttttgttgagtcgtttctgctgaacggagttcatatcaagaccaccgtaacaa |
217 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38830813 |
ttcataactcattcttctattattatacagtactaatta----tgggttttcttgagtcgtttctgctgaacggagttcatatcaagaccaccgtaacaa |
38830908 |
T |
|
| Q |
218 |
acaagcagcaagaggttgacaacctactatggtccttcttacgtcctgcaaattatgatggaccaaaggttattgggttcgatgtcgagttgtcaatgtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
38830909 |
acaagcagcaagaggttgacaacctactatggtccttcttacgtcctgcaaattataatggaccaaaggtaatcgggttcgatgtcgagttgtcaatgtt |
38831008 |
T |
|
| Q |
318 |
tgaaaataaggtatcagaggaagaaatctacgacaattccgaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
38831009 |
tgaaaataaggtatcagaggaagaaatctacgacaattccgaatgtgcaactctgcacctatgtaatggccagttgtgtcttattattcagctatgtcat |
38831108 |
T |
|
| Q |
418 |
ttagattcagttcccacatcattgcttaactttcttcgactgccagattatacctttgtcagtgttggtattaaagatgatttggctaaacttaagaagg |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38831109 |
ttagattcagttcccacatcattgcttaactttcttcgactgccagattatacctttgtcagtgttggtattaaagatgatttggctaagcttaagaagg |
38831208 |
T |
|
| Q |
518 |
aatatgggattagatgcagaaatgctgtggaacttggacctcttgctgctagtgtcttgaaagtgcctcgtttggctttctg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38831209 |
aatatgggattagatgcagaaatgctgtggaacttggacctcttgctgctagtgtcttgaaagtgcctcgtttggctttctg |
38831290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 158 - 572
Target Start/End: Original strand, 38820454 - 38820868
Alignment:
| Q |
158 |
tcatgggttttgttgagtcgtttctgctgaacggagttcatatcaagaccaccgtaacaaacaagcagcaagaggttgacaacctactatggtccttctt |
257 |
Q |
| |
|
|||||||||| || ||| ||||| |||||||||||| | ||| ||||||| |||||||| || ||| ||| | | ||| || | |||||||| ||||| |
|
|
| T |
38820454 |
tcatgggtttcgtggagaagtttcagctgaacggagtccttatagagaccactgtaacaaataaacagaaagtgatcgacgacattctatggtctttctt |
38820553 |
T |
|
| Q |
258 |
acgtcctgcaaattatgatggaccaaaggttattgggttcgatgtcgagttgtcaatgtttgaaaataaggtatcagaggaagaaatctacgacaattcc |
357 |
Q |
| |
|
|| ||||| ||||||| | ||||| |||||||| ||||| ||| |||||||||| |||| ||||||||| |||||||| ||||||| | | | || |
|
|
| T |
38820554 |
acatcctgaaaattataaaggacctaaggttatcgggtttgatatcgagttgtcgatgtgtgaaaataaagtatcagaagaagaaaccaattttgagacc |
38820653 |
T |
|
| Q |
358 |
gaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcatttagattcagttcccacatcattgcttaactttcttcgac |
457 |
Q |
| |
|
|||||||||| || | ||||| ||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| | |
|
|
| T |
38820654 |
gaatgtgcaatcttgaatctatgcaatggtcattcgtgtcttattattcagctatgtcatttagattcatttcccacatcattgcttaattttcttcgtc |
38820753 |
T |
|
| Q |
458 |
tgccagattatacctttgtcagtgttggtattaaagatgatttggctaaacttaagaaggaatatgggattagatgcagaaatgctgtggaacttggacc |
557 |
Q |
| |
|
| ||||||||||||||||| |||||||||| || || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38820754 |
ttccagattatacctttgttggtgttggtatcaatcataatttggctaaacttgagaaggaatatggggttagatgcagaaatgctgtggaacttggacc |
38820853 |
T |
|
| Q |
558 |
tcttgctgctagtgt |
572 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
38820854 |
cttggctgctagtgt |
38820868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 455
Target Start/End: Original strand, 28159296 - 28159395
Alignment:
| Q |
356 |
ccgaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcatttagattcagttcccacatcattgcttaactttcttcg |
455 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||| | | ||||||||||||||| ||||||| ||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
28159296 |
ccgaatatgcaactctgcatctatgtattggttattcatgtcttattattcagtcatgtcattaagattcatttcccacaacattgcttaattttcttcg |
28159395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 446
Target Start/End: Original strand, 16081884 - 16081974
Alignment:
| Q |
356 |
ccgaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcatttagattcagttcccacatcattgcttaa |
446 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||| | ||| |||||||||||| | ||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
16081884 |
ccgaatatgcaactctgcatctatgtattggttatttgtgacttattattcagttatgtcattaagattcatttcccacatcattacttaa |
16081974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University