View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21410_high_3 (Length: 477)
Name: NF21410_high_3
Description: NF21410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21410_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 39082616 - 39082156
Alignment:
| Q |
1 |
taattattgttgcagagaaaaattaactaatttacgaaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatat |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082616 |
taattattgtggcagagaaaaattaactaatttacaaaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatat |
39082517 |
T |
|
| Q |
101 |
ttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082516 |
ttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaac |
39082417 |
T |
|
| Q |
201 |
aacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatccgatctttct |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082416 |
aacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatccgatctttct |
39082317 |
T |
|
| Q |
301 |
ttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgtgtataccatgaattatgatgttggtcttttctt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082316 |
ttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgtgtataccatgaattatgatgttggtcttttctt |
39082217 |
T |
|
| Q |
401 |
gtattctaatacatggtccttcagcaatgtgtacatttacacctctaccatcaattgtttt |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082216 |
gtattctaatacatggtccttcagcaatgtgtacatttacacctctaccatcaattgtttt |
39082156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 31727253 - 31726939
Alignment:
| Q |
1 |
taattattgttgcagagaaaaattaactaatttacgaaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatat |
100 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31727253 |
taattactgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatat |
31727154 |
T |
|
| Q |
101 |
ttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaac |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727153 |
ttttgtcctcttcataggaatcactatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaac |
31727054 |
T |
|
| Q |
201 |
aacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatccgatctttct |
300 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
31727053 |
aacatcaatgaaaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatagattgtgatcccatcaccatccgatctttct |
31726954 |
T |
|
| Q |
301 |
ttcctaacacgatgg |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
31726953 |
ttcctaacacgatgg |
31726939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 39076048 - 39075959
Alignment:
| Q |
120 |
atcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaat |
209 |
Q |
| |
|
|||||||||||| || |||||||| || |||||| | ||||| |||||||||||||||||| ||| || |||||||||| ||||||||| |
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|
| T |
39076048 |
atcactatgacccaaaagcataaccttattatgatgagtcatgaaattattagaaatagtaatagctgtagatccatgaataacatcaat |
39075959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 7593253 - 7593472
Alignment:
| Q |
38 |
accttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagag |
137 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||||||| |||||| ||||||| | ||||| | ||| ||||||||||| || || || |
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| T |
7593253 |
accttggcattctttggacaagcccttcaccaaaatgattaaaagcaatagtaacttgcatgtccttgtcttgtgtataagaatcactatgtcccaaaag |
7593352 |
T |
|
| Q |
138 |
cataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaa |
237 |
Q |
| |
|
||||||||||| |||| | |||||||| ||||| |||||||||| ||| | |||||||| | ||||||||| | ||| ||| |||||| ||||| ||| |
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|
| T |
7593353 |
cataactttgtcatgatgagtcatatagttatttgaaatagtaatagcattagatccatgtataacatcaataagaccatcacgacaattagacaaagaa |
7593452 |
T |
|
| Q |
238 |
caatgatccacccaaatatg |
257 |
Q |
| |
|
|||||||| | ||||||||| |
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| T |
7593453 |
caatgatcaatccaaatatg |
7593472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 43131564 - 43131344
Alignment:
| Q |
38 |
accttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagag |
137 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||| || |||||||| |||||| ||||||| || ||||| ||| | |||||||||||| || || |
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| T |
43131564 |
accttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcatgttcttgtcttgagtataagtatcactatgacccaaaag |
43131465 |
T |
|
| Q |
138 |
cataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaa |
237 |
Q |
| |
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||||||||| | ||| | ||||||||||| ||||| || |||| || || || ||||||| | ||||||||||||| ||| ||| || ||||| ||| |
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| T |
43131464 |
cataactttatcatggtgagtcatataattgttagagatggtaattgcagtggacccatgaatagcatcaatcaaaccatcattacagttagacaaagaa |
43131365 |
T |
|
| Q |
238 |
caatgatccacccaaatatga |
258 |
Q |
| |
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|||||||||||||||| |||| |
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|
| T |
43131364 |
caatgatccacccaaacatga |
43131344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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