View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21410_low_1 (Length: 642)
Name: NF21410_low_1
Description: NF21410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21410_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 24 - 620
Target Start/End: Complemental strand, 49553245 - 49552654
Alignment:
| Q |
24 |
taaccttcacataagcccatctctcattgttctggaccccctctatctcttcatcgatgttttcatgcacaatctagaatgtgttctgcttgggaaaata |
123 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49553245 |
taaccttcacataaccccatctctcattgttctggaccccctctatctcttcatcgaagttttcatgcacaatctagaatgtgttctgcttgggaagata |
49553146 |
T |
|
| Q |
124 |
taatgtcctgtttaaaagagcacagtcgtagtcaatgcttgagtttcatgtatttacaatgannnnnnnnn---cgcgagtatctaaatttatataaatg |
220 |
Q |
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| T |
49553145 |
taatgtcctatttaaaag--cacggtcgtagtcaatgcttgagtttcatgtatttacaatgattttttttttctcgcaagtatctaaat------aaatg |
49553054 |
T |
|
| Q |
221 |
aatggaaattccaaaggcacgtggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtcaacatggaagac |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49553053 |
aatggaaattccaaaggcacgtggaagacaagaaaacctactccattatcaatcattgaatgcataaagcttatcttctgttactgtcaacatggaagac |
49552954 |
T |
|
| Q |
321 |
atggtaaaaacataacactgcaagaacaagagatgggcaaattgatcctttacagaagttattctggattatgctacctaacattgctacaaatgttgct |
420 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552953 |
atggtaaaaacataacactgcaagaacaagagatggccaaattgatcctttacagaagttattctggattatgctacctaacattgctacaaatgttgct |
49552854 |
T |
|
| Q |
421 |
tcaaaaacattgctacaatgttcagactttgtgtcaattttttcattgtgaaagtagctcaagacaacaaatagaaaaaatatattaaacgaatactgaa |
520 |
Q |
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| T |
49552853 |
tcaaaaacattgctacaatgttcagactttgtgtcaattttttcattgtgaaagtagctcaagacaacaaatagaaaaaatatattaaacgaatattgaa |
49552754 |
T |
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| Q |
521 |
cctgctgaaccaacatatatttcatgtagaggtaacgatgtacccatggcctacacatttgtcataactgcatttcggtaatctggtagcagatgttaca |
620 |
Q |
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| T |
49552753 |
cctgctgaaccaacatatatttcatgtagaggtaacgatgtacccatggcctacacatttgtcatgactgcatttcggtaatctagtagcagatgttaca |
49552654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 223 - 417
Target Start/End: Complemental strand, 49537730 - 49537536
Alignment:
| Q |
223 |
tggaaattccaaaggcacgtggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtcaacatggaagacat |
322 |
Q |
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| T |
49537730 |
tggaaattccaaaagcacatggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtcaacatggaagacat |
49537631 |
T |
|
| Q |
323 |
ggtaaaaacataacactgcaagaacaagagatgggcaaattgatcctttacagaagttattctggattatgctacctaacattgctacaaatgtt |
417 |
Q |
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| T |
49537630 |
ggtaaaaacaaaacaccacaagaacaagggatggccaaattgatcctttacagaagttattctggattatgctacctaacattgcttcaaatgtt |
49537536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 49538578 - 49538498
Alignment:
| Q |
24 |
taaccttcacataagcccatctctcattgttctggaccccctctatctcttcatcgatgttttcatgcaca-atctagaat |
103 |
Q |
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||||||||||||||||||||||||||||| |||| || ||||||||||||||||| | ||||||||| ||| ||||||||| |
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| T |
49538578 |
taaccttcacataagcccatctctcattgctctgtactccctctatctcttcatcaaagttttcatggacagatctagaat |
49538498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 620
Target Start/End: Complemental strand, 49537541 - 49537360
Alignment:
| Q |
437 |
aatgttcagact-ttgtgtcaattttttcattgtgaaagtagctcaagacaacaaatagaaaaaatatattaaacgaatactgaacctgctgaaccaaca |
535 |
Q |
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|||||||||||| |||| ||| |||||| |||||||||||| ||||||| | ||||| |||| ||||| | || || |||| |||||||||||||| |
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| T |
49537541 |
aatgttcagactcttgtatcagttttttaattgtgaaagtaactcaagaaagcaaatggaaag----tattatatga-tattgaatctgctgaaccaaca |
49537447 |
T |
|
| Q |
536 |
tatatttcatgtagaggtaacgatgtacccat-ggcctacacatttgtcataactgca-tttcggtaatctggtagcagatgttaca |
620 |
Q |
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| T |
49537446 |
tatatttcatttagaggtattgatgtacccttctggctatacatttctcataactgcagtttcagtaatctactagcagaagttaca |
49537360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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