View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21410_low_3 (Length: 483)
Name: NF21410_low_3
Description: NF21410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21410_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 37 - 463
Target Start/End: Original strand, 23984284 - 23984708
Alignment:
| Q |
37 |
caaagtccaagatgagggaagacatggcctgtctaataaggccaaaactatatcaaataaaagagggatgacgtattcatagtcaaaaaagtctgccatg |
136 |
Q |
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| T |
23984284 |
caaagtccaagatgagggaagacatggcctgtctaatgaggccaaaactatatcaaataaaagagggatgacgtattcacagtcaaaaaagtctgccatg |
23984383 |
T |
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| Q |
137 |
ataactatactcataagatacttacttataaggttttgagttgtaaatataattttatttgcaa-ggggctgtgtagaccaaatcttcaattgatagata |
235 |
Q |
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| T |
23984384 |
ataactatactcataagatacttacttataaggttttgacttgtaaatataattttatttgcaaaggggctgtgtagaccaaatcttcaattgataga-- |
23984481 |
T |
|
| Q |
236 |
gaggcataaaaaataa-ttaattcacaacaatttgcattattttatatcaatattattcaataagtaaactgaaagtgatcgatatgaaaacaacaagaa |
334 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23984482 |
--ggcataaaaaaaaaattaattcacaacaatttgcattattttatatcaatattattcaataagtaaactgaaagtgatcgatatgaaaacaacaagaa |
23984579 |
T |
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| Q |
335 |
ccacactacctattaacaccagaaatataggttcactttctcacaactatttaaagtataatcataagctatctgcttatttatcctacaagttggtcac |
434 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23984580 |
ccacactacctattaacaccataaatataggttcactttctcacaactattttaagtgtaatcataagctatctgcttatttatcctacaagttggtcac |
23984679 |
T |
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| Q |
435 |
ttaaagatgaatattttgttgtggcaaac |
463 |
Q |
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|| |||||||||||||||||||||||||| |
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| T |
23984680 |
ttcaagatgaatattttgttgtggcaaac |
23984708 |
T |
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