View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21410_low_5 (Length: 412)
Name: NF21410_low_5
Description: NF21410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21410_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 396
Target Start/End: Original strand, 18560956 - 18561346
Alignment:
| Q |
7 |
tccaagaatataggtcaagaatcattaatcaatcatatattatataaccttaaatttagaacaatactattcagctgttttctcaaacgcagctcataaa |
106 |
Q |
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| T |
18560956 |
tccaaaaatataggtcaagaatcattaatcaatcatatattatataaccttaaatttagaacaatactattcagctgttttctcaagcgcagctcataaa |
18561055 |
T |
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| Q |
107 |
agaaacacacctgctccaagtaatatttttcattcgaccagctaacaggaggcatctccagggtagaatatccatatttactgttaaactttttaggaac |
206 |
Q |
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| T |
18561056 |
agaaacacacctgctccaagtaatatttttcattcgaccagctaacaggaggcatctccagggtagaatatccatatttactgttaaactttttaggaac |
18561155 |
T |
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| Q |
207 |
tcttttcactattcgaacttcgtctcgtaaagaatcaatgaaatgcttcacatcaaaaatgtcctcaaaattactgcaaaaagaaaactacacaacttta |
306 |
Q |
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| T |
18561156 |
tctttttactattcgaacttcgtctcgtaaagaatcaatgaaatgcttcacatcaaaaatgtcctcaaaattactgcaaaaagaaaactacacaacttta |
18561255 |
T |
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| Q |
307 |
gaatgatatggaggttaaattagaggatactcnnnnnnnnnnnntcagaacaaagt-tatacctagggtctgcccaaaatgatgtcttatc |
396 |
Q |
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| T |
18561256 |
gaatgatatggaggttaaattagaggatactcaaaaaataaaaatcagaacaaagtatatacctagggtctgcccaaaatgatgtcttatc |
18561346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 32034603 - 32034760
Alignment:
| Q |
115 |
acctgctccaagtaatatttttcattcgaccagctaacaggaggcatctccagggtagaatatccatatttactgttaaactttttaggaactcttttca |
214 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| ||| || |||||||||| ||||||||||||| |
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| T |
32034603 |
acctgctccaagtaatacttttcatttgaccagctaacaggaggcatctccagggtcgagtatccacttttcctagtaaactttttgggaactcttttca |
32034702 |
T |
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| Q |
215 |
ctattcgaacttcgtctcgtaaagaatcaatgaaatgcttcacatcaaaaatgtcctc |
272 |
Q |
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||||||||||||| ||||||||||||||||||||||| | |||||||| || ||||| |
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| T |
32034703 |
ctattcgaacttcatctcgtaaagaatcaatgaaatgtcttacatcaaatatatcctc |
32034760 |
T |
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