View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21410_low_6 (Length: 337)
Name: NF21410_low_6
Description: NF21410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21410_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 9e-95; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 19011715 - 19012023
Alignment:
| Q |
13 |
aatatacatgtgtgtctattacatatacaaatgtatttattttgtttaaaatccagtcttctattctctaaaaagaatcgtttgtagttgaagttggttc |
112 |
Q |
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| T |
19011715 |
aatatacatgtgtgtctattacatatacaaatgtatttattttgtgcaaaattcagtcttttaatctctaaaaagaatcatttgtagttgaagttggttc |
19011814 |
T |
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| Q |
113 |
atcttccgctggagctgtcaacaagattatttttgaaacttgtggnnnnnnngaggttaggctaaactatatacaaatttaatgttcttgcatgtttttg |
212 |
Q |
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| T |
19011815 |
atcttccgttggagctgtcaacaagattattttcgaaacttgtggaaaaaaagaggttaggctaaactatatacaaatttaatgttcttgcatgtttttg |
19011914 |
T |
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| Q |
213 |
atgnnnnnnnnnnnnnnnnngttctcttattcaatgttttacannnnnnnagggacaatgttttacatttttattctcacttttgtgcacagaatgcaaa |
312 |
Q |
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| T |
19011915 |
atgaaaactaaaaataaaaagttctcttattcaatgttttacatttttttacggacaatgttttacatttttattctcacttttgtgcacagaatgcaaa |
19012014 |
T |
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| Q |
313 |
tgaagttca |
321 |
Q |
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| T |
19012015 |
tggagttca |
19012023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 18824253 - 18824385
Alignment:
| Q |
83 |
aaaagaatcgtttgtagttgaagttggttcatcttccgctggagctgtcaacaagattatttttgaaacttgtggnnnnnnngaggttaggctaaactat |
182 |
Q |
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| T |
18824253 |
aaaaaaatcatttgtagttgaagttggttcatctgtagctggagctgtcaacaagattactgtcgaaacttgtgaaaaaacagaggttaggctaaactat |
18824352 |
T |
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| Q |
183 |
atacaaatttaatgttcttgcatgtttttgatg |
215 |
Q |
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| T |
18824353 |
acacaaatttaatgtacttgcatacttttgatg |
18824385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 212
Target Start/End: Original strand, 18797090 - 18797226
Alignment:
| Q |
76 |
ttctctaaaaagaatcgtttgtagttgaagttggttcatcttccgctggagctgtcaacaagattatttttgaaacttgtggnnnnnnngaggttaggct |
175 |
Q |
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| T |
18797090 |
ttctataaaaaaaatcatttgtagttgaagttggttcatctttagctggagctatcaacaagattactgtcgaaacttgtggagagaaagaggtcaggat |
18797189 |
T |
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| Q |
176 |
aaactatatacaaatttaatgttcttgcatgtttttg |
212 |
Q |
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| T |
18797190 |
aaactatacataaatttaatgtgcttgcatgcttttg |
18797226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 15623854 - 15623803
Alignment:
| Q |
165 |
gaggttaggc-taaactatatacaaatttaatgttcttgcatgtttttgatg |
215 |
Q |
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| T |
15623854 |
gaggttaggcataaactatacataaaattaatgttcttgcatgtttttgatg |
15623803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 15687857 - 15687817
Alignment:
| Q |
175 |
taaactatatacaaatttaatgttcttgcatgtttttgatg |
215 |
Q |
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| T |
15687857 |
taaactatacacaaaattaatgttcttgcatgattttgatg |
15687817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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