View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21410_low_7 (Length: 336)
Name: NF21410_low_7
Description: NF21410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21410_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 44643701 - 44644011
Alignment:
| Q |
6 |
taaaattagaacgatacaaagaaaactttgttagcttattgtgggatatatgctcataagagcgaagtagatcttgtagggatcaatcttcttacattat |
105 |
Q |
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| T |
44643701 |
taaatttagaacgatacaaagaaaactttgttagcttattatgggatatatgctcataagagcgaagtagatcttgtagggatcgatcttcttacattat |
44643800 |
T |
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| Q |
106 |
ttcatttttatcctccatctgttctataataacaatcacattatttgtaaaagaaaattgtcctagaagagtgacacttttcagatcttgctaacgaagg |
205 |
Q |
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| T |
44643801 |
ttcatttttatcctccatctgtttcataataacaatcac---atttgtaaaagaaaattgtcctagaagagtgacacttttcagatcttgctaatgaagg |
44643897 |
T |
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| Q |
206 |
gaagtgaatattatgtgataaagtgatcatgtgttatttagggttgatgaaaacaaagaataatattaaaggg-nnnnnnntgcttactatttgtgaata |
304 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44643898 |
gaagtgaatattatgtgataaaccgatcaagtgttatttagggttgatgaaaacaaagaataatattaaagggaaaaaaaatgcttactatttgtgaata |
44643997 |
T |
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| Q |
305 |
ggcgcagttggtcg |
318 |
Q |
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|||||||||||||| |
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| T |
44643998 |
ggcgcagttggtcg |
44644011 |
T |
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