View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21410_low_8 (Length: 293)

Name: NF21410_low_8
Description: NF21410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21410_low_8
NF21410_low_8
[»] chr5 (18 HSPs)
chr5 (18-288)||(39464370-39464640)
chr5 (20-208)||(39470673-39470861)
chr5 (54-208)||(39486564-39486718)
chr5 (56-208)||(39483361-39483513)
chr5 (23-208)||(39460318-39460503)
chr5 (224-288)||(39470572-39470636)
chr5 (218-282)||(39486755-39486819)
chr5 (55-208)||(39451100-39451256)
chr5 (98-208)||(39454782-39454892)
chr5 (22-208)||(39472103-39472289)
chr5 (55-208)||(39475606-39475762)
chr5 (215-272)||(39451287-39451344)
chr5 (218-263)||(39483547-39483592)
chr5 (218-279)||(39460537-39460598)
chr5 (223-263)||(39472325-39472365)
chr5 (224-279)||(39458118-39458173)
chr5 (218-257)||(43312380-43312419)
chr5 (218-263)||(39475796-39475841)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 39464640 - 39464370
Alignment:
Q  18 catcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39464640 catcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtt 39464541  T
Q  118 tctcttccccaaacctctgatccaggttccgcaatgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctcaatgtcacca 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39464540 tctcttccccaaacctctgatccaggttccgctatgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctcgatgtcacca 39464441  T
Q  218 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtctgtg 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39464440 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtg 39464370  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 39470861 - 39470673
Alignment:
Q  20 tcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttc 119  Q
    |||||||||| ||| ||||||| || |||||||| ||||||||| |||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  39470861 tcttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttc 39470762  T
Q  120 tcttccccaaacctctgatccaggttccgcaatgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctca 208  Q
    | ||| || |||||||||||||||||| |  |||||||||||||| || ||||| ||| ||||||||||||||||  |||| |||||||    
T  39470761 tgttctcccaacctctgatccaggttcggatatgaacgctctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctca 39470673  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 208
Target Start/End: Original strand, 39486564 - 39486718
Alignment:
Q  54 cgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgcaatg 153  Q
    |||||||||||| |||||| ||||||| || ||||||||  | ||||||||||||||||||  ||||||||||| || | | || ||| |||  |  |||    
T  39486564 cgatgtctacacaaaatcccttcccatttccgattctctccaggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttgtcatg 39486663  T
Q  154 aacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctca 208  Q
    |||||||||||||| ||||| |||||||||||||||||||| || || |||||||    
T  39486664 aacgctctccttgaagctcagaaaccaaacgtcaaacaagctgtatccaacctca 39486718  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 39483361 - 39483513
Alignment:
Q  56 atgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgcaatgaa 155  Q
    |||||||| |||||||| ||||||| | ||||| ||||||||| |||||||||||||||  || |||||||| || ||  |||| || ||| || || ||    
T  39483361 atgtctaccctaaatcccttcccatctttgattttcttaatgtaatcaaccttccagaatgttatcttcccccaaacttcgatctagtttctgccatcaa 39483460  T
Q  156 cgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctca 208  Q
    |||||||||||| ||||| ||||||||| | | |||||| ||||| |||||||    
T  39483461 cgctctccttgaagctcagaaaccaaacataatacaagctgtctccaacctca 39483513  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 39460318 - 39460503
Alignment:
Q  23 tagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctct 122  Q
    ||||||| ||||||||| | ||  |||||||||||||  ||||||||||  ||||||  |||||||||||  |  |||||||||||||||||||||||||    
T  39460318 tagtcatgaaactcccatacacatcagaatccgatgttaacactaaatcacttcccacttctgattctctcgacatcatcaaccttccagaagtttctct 39460417  T
Q  123 tcccc-aaacctctgatccaggttccgcaatgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctca 208  Q
    ||||| |||| || || |||  ||||  |||||  ||| |||| || ||||| ||| ||||||||||||||||||| ||||| ||||    
T  39460418 tcccccaaacatc-gaaccaacttccagaatgatggctttcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctca 39460503  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 39470636 - 39470572
Alignment:
Q  224 ttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtctgtg 288  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||||    
T  39470636 ttgttgacatgttctgcacaaacatgattgatgttgccaaagaattttccctccctgcgtttgtg 39470572  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 39486755 - 39486819
Alignment:
Q  218 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcg 282  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||    
T  39486755 ccttcgttgttgacatgttctgcaccaccatgattgatattgccaaagaattttccatccctgcg 39486819  T

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Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 39451100 - 39451256
Alignment:
Q  55 gatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccg---caa 151  Q
    |||||| ||||||||||| |||| || || |||||||| ||  |||||||||||||||||||||||||||| | || | |  ||||||||| ||   | |    
T  39451100 gatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttcca 39451199  T
Q  152 tgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctca 208  Q
    ||   |||||||| || ||||| |||||||| |||||||||||||| ||||||||||    
T  39451200 tgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctca 39451256  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 39454782 - 39454892
Alignment:
Q  98 tcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgcaatgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgt 197  Q
    |||||||||||||||||   |||||||||| || | || |||||| |||| | |||  ||||| |||||| ||||| |||||||||||||||||||||||    
T  39454782 tcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgt 39454881  T
Q  198 ctctaacctca 208  Q
     ||||||||||    
T  39454882 atctaacctca 39454892  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 39472103 - 39472289
Alignment:
Q  22 ttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctc 121  Q
    ||||| |||||| ||||||| | | ||||| |||||||||||||||||||| |||| || || ||||| ||  |  |||||||||||||||||  |||||    
T  39472103 ttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctc 39472202  T
Q  122 ttccccaaacctctgatccaggttccgcaatgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctca 208  Q
    || ||| || | | |||| |||| || | ||||  || ||||| || ||||| |||||||||||||||||||  || ||||||||||    
T  39472203 ttgccccaaacacagatcaaggtccctctatgactgcgctcctcgaagctcagaaaccaaacgtcaaacaagtagtatctaacctca 39472289  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 39475606 - 39475762
Alignment:
Q  55 gatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctcttccccaaacctctgatccaggt---tccgcaa 151  Q
    |||||| ||||||||||| |||| || || || ||||| ||  |||||||||||||||||||||||||||||| || | | |||||||||   ||  | |    
T  39475606 gatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttcca 39475705  T
Q  152 tgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctca 208  Q
    |||  |||||||| || ||||| ||||||||||| |||||||| ||||| |||||||    
T  39475706 tgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctca 39475762  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 39451287 - 39451344
Alignment:
Q  215 ccaccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttc 272  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||||||    
T  39451287 ccaccatcgttgttgacatgttctgcaccaccatgattgatattgccaaagaattttc 39451344  T

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Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 39483547 - 39483592
Alignment:
Q  218 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaa 263  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  39483547 ccttcgttgttgacatgttctgcaccaccatgattgatgttgccaa 39483592  T

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Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 39460537 - 39460598
Alignment:
Q  218 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccct 279  Q
    |||| |||||||||||||||||||| || ||||||||| ||||||| |||||||| ||||||    
T  39460537 cctttgttgttgacatgttctgcactaaaatgattgatattgccaaagaattttcagtccct 39460598  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 39472325 - 39472365
Alignment:
Q  223 gttgttgacatgttctgcaccaacatgattgatgttgccaa 263  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  39472325 gttgttgacatgttctgcacaaacatgattgatgttgccaa 39472365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 39458173 - 39458118
Alignment:
Q  224 ttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccct 279  Q
    ||||||||||||||||||||| ||||||||||||||  || |||||||| ||||||    
T  39458173 ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttctgtccct 39458118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 43312419 - 43312380
Alignment:
Q  218 ccttcgttgttgacatgttctgcaccaacatgattgatgt 257  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  43312419 ccttcgttgttgacatgttctgcaccaccatgattgatgt 43312380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 39475796 - 39475841
Alignment:
Q  218 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaa 263  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||    
T  39475796 ccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaa 39475841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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