View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21411_high_1 (Length: 369)
Name: NF21411_high_1
Description: NF21411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21411_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 27312613 - 27312966
Alignment:
| Q |
1 |
catattctgcaccaacacggtcaagatcaacaggattcttatctattctcttgttatcacggtcaaactcaacaggtgtgttggtgcaaccaggtgagga |
100 |
Q |
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| T |
27312613 |
catattctgcaccaacacggtcaagatcaacaggattcttatctattctcttgttatcacggtcaaactcaacaggtgtgttggtgcaaccaggtgagga |
27312712 |
T |
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| Q |
101 |
ttgtgagaggtttacattgagattacccgataaagttcgaaagcagatgatgatgaacacgacgacgcttaagcgtgcaaaaagttgtgtaagttttacg |
200 |
Q |
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| T |
27312713 |
ttgtgagaggtttacactgaggttacccgataaagttcgaaagcagatgatgttgaacacgacgacacttaagcgtgcaaaaagttgtgtaagttttacg |
27312812 |
T |
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| Q |
201 |
agaatgagcagtggcacgtgcggatataggtcaagaagttttggttgtggaagtgggattggtcaagtgcagtacgaaaggtttggaagtgaagaagaag |
300 |
Q |
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| T |
27312813 |
agaatgagcagtggcacgttcggatataggtcaagaagttttggttgtggaagtgggattggtcaagtgcagtacgaaaggtttggaagtgaggaagaag |
27312912 |
T |
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| Q |
301 |
agaattatttagggtttcttaggaatagttggaataacaaatcggtgagaaaat |
354 |
Q |
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| T |
27312913 |
agaattacttagggtttcttaggaatagttggaataacaaatcggtgagaaaat |
27312966 |
T |
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