View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21411_low_2 (Length: 209)
Name: NF21411_low_2
Description: NF21411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21411_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 14425227 - 14425034
Alignment:
| Q |
1 |
ctttcaaattttccctctctgctttcaacatcgtcctccttcaccaccattttgttctccccttgggttatctaaggtagttctgcagaatcctactata |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14425227 |
ctttcaaattttccctctctactttcaacatcgtcctccttcaccaccattttgttctccctttgggttatctaagatagttctgcagaatcctactata |
14425128 |
T |
|
| Q |
101 |
gacatattagaaagttgtgtagaaattctcccaatttgtgtctcgagactcttgattgatgcttcattatttctctgagcttatttctaatttt |
194 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14425127 |
gacatattagaaagttgtgtggaaatcctcccaatttgtgtctcgagactcttgattgatgcttcattatttctctgagcttatttctgatttt |
14425034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 12960577 - 12960693
Alignment:
| Q |
58 |
tccccttgggttatctaaggtagttctgcagaatcctactatagacatattagaaagttgtgtagaaattctcccaatttgtgtctcgagactcttgatt |
157 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||| |||| ||||||| || | |||||| ||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
12960577 |
tccctttgggttatctaaggtagctcttgagaatcatactctagacatgttggcaagttgcatagaaattcgcccaatttgtgtctcgagattcttgatt |
12960676 |
T |
|
| Q |
158 |
gatgcttcattatttct |
174 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
12960677 |
gaagcatcattatttct |
12960693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University