View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21412_high_1 (Length: 379)
Name: NF21412_high_1
Description: NF21412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21412_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 35622234 - 35621884
Alignment:
| Q |
13 |
tactccttcattgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35622234 |
tactccttcattgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtcgagagaaagaaattctgaaaatgctcaataaagtttcat |
35622135 |
T |
|
| Q |
113 |
cagaagaaagtgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35622134 |
cagaagaaagtgttgatgatgataacattaacctagcttcaagtttaccaaaaccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaat |
35622035 |
T |
|
| Q |
213 |
aggaaaattgtttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35622034 |
aggaaaattgtttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagct |
35621935 |
T |
|
| Q |
313 |
gttggaaatttagggttcaacatttatttggctgtagtttttagtgcttca |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35621934 |
gttggaaatttagggttcaacatttatttggctgtagtttttagtgcttca |
35621884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 34263309 - 34262963
Alignment:
| Q |
20 |
tcattgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaaga |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| | |||| |||||| | ||||| |||| |||| |
|
|
| T |
34263309 |
tcattgcttatttcttcgttactgagtcgccaaggtggcttattatgcaaggtcgagagaaagaaattataaaaaggctcaaaagagttttatcaaaaga |
34263210 |
T |
|
| Q |
120 |
aagtgttgatgatgat---aacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaatagga |
216 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| ||| ||||||||||| || ||| |||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
34263209 |
aagtgttgatgatgatgataacactaatctaggttcgagtttaccaaaaccacccacaaaagaaaaggttacaatttttcaacattactcttcaataggt |
34263110 |
T |
|
| Q |
217 |
aaattgtttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttg |
316 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
34263109 |
gaattgattcataaaagatgggctcttataagaataatagctgttatgattcttggaattggaattggaatggtttatcttggtatgccactagcagttg |
34263010 |
T |
|
| Q |
317 |
gaaatttagggttcaacatttatttggctgtagtttttagtgcttca |
363 |
Q |
| |
|
||||||| || ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
34263009 |
gaaatttgggattcaatatttatttggctgtggtttttagtgcttca |
34262963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 14580098 - 14579755
Alignment:
| Q |
20 |
tcattgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaaga |
119 |
Q |
| |
|
||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| || ||||| |
|
|
| T |
14580098 |
tcattgcttatctctttgttaccgagtcgcctaggtggcttgttatgcaaggtcgagagaaagaaattttgaaaatgctcaaaagggtttcttctgaaga |
14579999 |
T |
|
| Q |
120 |
aagtgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaa |
219 |
Q |
| |
|
||||| |||||||||| | ||||| ||||||| | ||||||||| | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||||| || |
|
|
| T |
14579998 |
aagtgccgatgatgatagcgttaacttagcttcgaatttaccaaaacttcccccaaaagaaaaagtttcattttttcaactttactcatcaataggagaa |
14579899 |
T |
|
| Q |
220 |
ttgtttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaa |
319 |
Q |
| |
|
|| |||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14579898 |
ttatttcataaaagatgggctgttataagaatgatagctgttatgattcttggaattggacttggaatggtttattttggtatgccactagctgttggaa |
14579799 |
T |
|
| Q |
320 |
atttagggttcaacatttatttggctgtagtttttagtgcttca |
363 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
14579798 |
atttaggattcaacatttacttggctgtggtttttagtgcttca |
14579755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 14543489 - 14543832
Alignment:
| Q |
20 |
tcattgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaaga |
119 |
Q |
| |
|
||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| || ||||| |
|
|
| T |
14543489 |
tcattgcttatctctttgttaccgagtcgcctaggtggcttgttatgcaaggtcgagagaaagaaattttgaaaatgctcaaaagggtttcttctgaaga |
14543588 |
T |
|
| Q |
120 |
aagtgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaa |
219 |
Q |
| |
|
||||| |||||||||| | ||||| ||||||| | ||||||||| | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||||| || |
|
|
| T |
14543589 |
aagtgccgatgatgatagcgttaacttagcttcgaatttaccaaaacttcccccaaaagaaaaagtttcattttttcaactttactcatcaataggagaa |
14543688 |
T |
|
| Q |
220 |
ttgtttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaa |
319 |
Q |
| |
|
|| |||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14543689 |
ttatttcataaaagatgggctgttataagaatgatagctgttatgattcttggaattggacttggaatggtttatttaggtatgccactagctgttggaa |
14543788 |
T |
|
| Q |
320 |
atttagggttcaacatttatttggctgtagtttttagtgcttca |
363 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
14543789 |
atttaggattcaacatttaattggcagtggtttttagtgcttca |
14543832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 10404724 - 10404808
Alignment:
| Q |
260 |
ttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttcaacatttatttggc |
344 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||| |||||||||||| || |||||||| ||||| ||| ||||||| ||||| |
|
|
| T |
10404724 |
ttatggttcttggtatgggaattggaatggtttattttggtatgccactcgccgttggaaacttaggattcgacatttacttggc |
10404808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 10378725 - 10378825
Alignment:
| Q |
247 |
agaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactagctgttggaaatttagggttcaacatttatttggctg |
346 |
Q |
| |
|
|||||||| || || ||| ||||| ||||||||||||||||||| |||| ||| ||||| |||| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
10378725 |
agaatgatggcggtaatggttcttggtattggaattggaatggtctattttggaatgcctttagccgttggaaacttaggttttgacatttatttggctg |
10378824 |
T |
|
| Q |
347 |
t |
347 |
Q |
| |
|
| |
|
|
| T |
10378825 |
t |
10378825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 10404496 - 10404560
Alignment:
| Q |
20 |
tcattgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaa |
84 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||| |||||| | |||||||||||| | |||||| |
|
|
| T |
10404496 |
tcattggttatttctttgttaccgagtctccaagatggcttctaatgcaaggtagaaacaaagaa |
10404560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University