View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_high_11 (Length: 458)
Name: NF21413_high_11
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 440
Target Start/End: Original strand, 39076390 - 39076817
Alignment:
| Q |
13 |
aatatcgtggcatgaaagcaatttagaatttgtatggttataaatactaatccaagaaaaggagnnnnnnntggcaattgtggagtacctgatagaaatg |
112 |
Q |
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| T |
39076390 |
aatatcgtgacatgaaagcaatttagaatttgtatggttataaatactaatccaagaaaaggagaaaaaaatggcaattgtggagtacctgatagaaatg |
39076489 |
T |
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| Q |
113 |
gaagattgtagcattgtgaagttcatactaatggttagtgatgagaattagaagaagaggatggcctttcggaaccaactccatggctctcatcctcacc |
212 |
Q |
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| T |
39076490 |
gaagattgtagcattgtgaagttcatactaatggttagtgatgagaattagaagaagaggatggcctttcggaaccaactccatggctctcatcctcacc |
39076589 |
T |
|
| Q |
213 |
ttgaattctagcaggaatacagaaacctgtcaaagcatcagacagaaacctgctaccgaagatagaagcttggtgaatttgttgttgagacttgtgacta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39076590 |
ttgaattctagcaggaatacagaaacctgtcaaagcatcagacagaaacctgctaccgaagatagaagcttggtgaatttgttgttgagacttgtgatta |
39076689 |
T |
|
| Q |
313 |
tgatgatccaccgaggcatccgcaattggaatatcattccaaggacgaagtgatggcgaaaaactggactgaagggtccccctatgggcggaaaaagtcg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39076690 |
tgatgatccaccgaggcatccgcaattggaatatcattccaaggacgaagtgatggcgaaaaactggactgaagggtccccctatgggcggaaaaagtcg |
39076789 |
T |
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| Q |
413 |
aaccttggccaagaaacgcaggcgaatt |
440 |
Q |
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| T |
39076790 |
aaccttggccaagaaacgcaggcgaatt |
39076817 |
T |
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