View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21413_high_12 (Length: 451)
Name: NF21413_high_12
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 33966496 - 33966923
Alignment:
| Q |
10 |
aatatgtcttccatcgaagcttatctactactcaagtccaatcaattgattaccttaacatacatattttatcacaatttttcgcaatatcaagaattcc |
109 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966496 |
aatatgtcttccatccaagcttatctactactcgagtccaatcaattgattaccttaacatacatattttatcacaatttttcgcaatatcaagaattcc |
33966595 |
T |
|
| Q |
110 |
gacgtgaccgcaaattaaaaactttggacacaatcacaccacaaacaaaggaaaatgagataaagtatagtactactcacgtgtaaactcctgcatgaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966596 |
gacgtgaccgcaaattaaaaactttggacacaatgacaccacaaacaaaggaaaatgagataaagtatagtactactcacgtgtaaactcctgcatgaac |
33966695 |
T |
|
| Q |
210 |
cttgatgacaactctaacaagattgatggaaggaagagaatcaatggcatcttgaattgtatcaaaatctccaaaagaaggattcttatcaacgtgcaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966696 |
cttgatgacaactctaacaagattgatggaaggaagagaatcaatggcattttgaattgtatcaaaatctccaaaagaaggattcttatcaacgtgcaaa |
33966795 |
T |
|
| Q |
310 |
gtataagaagcaaatagcttattttttgcagccttgtaaacagtgtgtttgagaccaccaacaaaactcacccatttcgtgaattgttgttctgctaagt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33966796 |
gtataagaagcaaatagcttattttttgcagccttgtaaacagtgtgtttgagaccaccaacaaaactcacccatttcatgaattgttgttctgctaagt |
33966895 |
T |
|
| Q |
410 |
ctgctcttgttgtattgtaggttgataa |
437 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33966896 |
ctgctcttgttgtattgtaggttgataa |
33966923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 183 - 403
Target Start/End: Complemental strand, 43076909 - 43076689
Alignment:
| Q |
183 |
tactcacgtgtaaactcctgcatgaaccttgatgacaactctaacaagattgatggaaggaagagaatcaatggcatcttgaattgtatcaaaatc-tcc |
281 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||| || | ||| ||| | ||||| ||||||||||| ||||||||| || |||||| ||| |
|
|
| T |
43076909 |
tacttacgtgtaaacccctgcatgaaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattg-atgaaaatcctcc |
43076811 |
T |
|
| Q |
282 |
aaaagaaggattcttatcaacgtgcaaagtataagaagcaaatagcttattttttgcagccttgtaaacagtgtgtttgagaccaccaacaaaactcacc |
381 |
Q |
| |
|
| | || |||| ||||| |||||||||||||| ||| ||||||||||| || | | | ||||| |||||||||||||||||||| ||||| |
|
|
| T |
43076810 |
tttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcacc |
43076711 |
T |
|
| Q |
382 |
catttcgtgaattgttgttctg |
403 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
43076710 |
catttcatgaattgttgttctg |
43076689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University