View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_high_17 (Length: 430)
Name: NF21413_high_17
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 8 - 415
Target Start/End: Complemental strand, 47036377 - 47035970
Alignment:
| Q |
8 |
tagcaaaggacatgtcccaaatagtttgagtaatatgaaagtagaagacttaatagatagtaatgagcaatggaatttatctctattaaataaatagcca |
107 |
Q |
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| T |
47036377 |
tagcaaaggacatgtcccaaatagtttgagtaatatgaaagtagaagacttaatagatagtaatgagcaatggaatttatctctattaaataaatagcca |
47036278 |
T |
|
| Q |
108 |
cttgttagatgatatagtccttgacataaggagcctagtgcaatctgatatcaatttaagagctgatttgtgtgttaccctgggatattgtcgctaccac |
207 |
Q |
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| T |
47036277 |
cttgttagatgatatagtccttgacataaggagcctagtgcaatctgatatcaatttaggagctgatttgtgtgttaccctgggatattgtcgctaccac |
47036178 |
T |
|
| Q |
208 |
ttacaagttacaagtccctttgcaggtttaataacatggaggctaatagcttttggtccaatgtttggagaattcatgctccagagcgtgttagatactt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47036177 |
ttacaagttacaagtccctttgcaggtttaataacatggaggctaatagcttttggtccaatgtttggagaattcatgctccagagcgtgttagatgctt |
47036078 |
T |
|
| Q |
308 |
tatttggctagtttgtcatggaagactgttcattgatttgaaaaagtcgcgtaatcaattaggtgattcgtgctgcaatttttgtggtaatgaaattgaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47036077 |
tatttggctagtttgtcatggaagactgttcattgatttgaaaaagtcgtgtaatcaattaggtgattcgtgctgcaatttttgtggtaatgaaattgaa |
47035978 |
T |
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| Q |
408 |
tcaatttt |
415 |
Q |
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|||||||| |
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| T |
47035977 |
tcaatttt |
47035970 |
T |
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