View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_high_20 (Length: 383)
Name: NF21413_high_20
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 32631998 - 32631629
Alignment:
| Q |
17 |
atgatccagctaacaaaccaactccagtggaagcatactcttgtgcactctccttatcacttgaaagtccagtaactgacatataacaagcatacacata |
116 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
32631998 |
atgatccagctaacaatccaactccagtggaagcatactcttgtgcactctccttatcacttgaaagtccagtaactagcatataacaagtatacacata |
32631899 |
T |
|
| Q |
117 |
attaagc---------aagtgtg------tgtctatatattgtaaagtctactaatataattgaatataaataagttgtgtgcatgtataagatatattt |
201 |
Q |
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| T |
32631898 |
attaagataattaagtaagtgtgagtgtatgtctatatatagtaaagtttactaatataattgaatataaataagttgtgtgcatgtgtaagatatattt |
32631799 |
T |
|
| Q |
202 |
agaggggatgtgtagctcacttggttgagctaagagattaaaattgttaaaggtttatggttcaaatccttataattgataaaatatgaacctaacaatt |
301 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32631798 |
agaggggatgtgtagctcatttggttgagctaagagattaaaagtgttaaaggttcatggttcaaatccttataattgataaaatatgaacctaacaatt |
32631699 |
T |
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| Q |
302 |
gacatattaacatttgtcattnnnnnnnncttttgatacgatctaattttatgcggtttaatttggatat |
371 |
Q |
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| T |
32631698 |
gacatattaacatttgtcattaaaaaaaacttttgatacaatctaattttatgcggtttaatttggatat |
32631629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 32613321 - 32613241
Alignment:
| Q |
17 |
atgatccagctaacaaaccaactccagtggaagcatactcttgtgcactctccttatcacttgaaagtccagtaactgaca |
97 |
Q |
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| T |
32613321 |
atgatccagctaataatccaactccagtggaagcatactcttgcgcactctccttatcacttgaaagtccagtgactgaca |
32613241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 6227750 - 6227808
Alignment:
| Q |
205 |
ggggatgtgtagctcacttggttgagctaagagattaaaattgttaaaggtttatggtt |
263 |
Q |
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| T |
6227750 |
ggggatggatagctcacttggttgagctaagatattaaaatagttaaagatttaaggtt |
6227808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 3594581 - 3594618
Alignment:
| Q |
206 |
gggatgtgtagctcacttggttgagctaagagattaaa |
243 |
Q |
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| T |
3594581 |
gggatgagtagctcacttggttgagctaagagattaaa |
3594618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 3587853 - 3587892
Alignment:
| Q |
205 |
ggggatgtgtagctcacttggttgagctaagagattaaaa |
244 |
Q |
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| T |
3587853 |
ggggatgagtagctcacttggttgagctaagggattaaaa |
3587892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 3572664 - 3572700
Alignment:
| Q |
207 |
ggatgtgtagctcacttggttgagctaagagattaaa |
243 |
Q |
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| T |
3572664 |
ggatgagtaactcacttggttgagctaagagattaaa |
3572700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 2906396 - 2906353
Alignment:
| Q |
202 |
agaggggatgtgtagctcacttggttgagctaagagattaaaat |
245 |
Q |
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|||||||||||||| || |||||||||| ||||||||||||||| |
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| T |
2906396 |
agaggggatgtgtaacttacttggttgaactaagagattaaaat |
2906353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 36160031 - 36160076
Alignment:
| Q |
207 |
ggatgtgtagctcacttggttgagctaagagattaaaattgttaaa |
252 |
Q |
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||||| ||||||||||||||||||||| | |||||||| ||||||| |
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| T |
36160031 |
ggatgggtagctcacttggttgagctaggggattaaaagtgttaaa |
36160076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 42874604 - 42874644
Alignment:
| Q |
203 |
gaggggatgtgtagctcacttggttgagctaagagattaaa |
243 |
Q |
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|||||| || |||||||||||||||||||||| |||||||| |
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| T |
42874604 |
gagggggtgggtagctcacttggttgagctaacagattaaa |
42874644 |
T |
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