View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_high_29 (Length: 274)
Name: NF21413_high_29
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 40511124 - 40511375
Alignment:
| Q |
17 |
acatggaaccaaaaactttcttataaatgaatataaatttgatgtctaatgacttactcctcgaactagttcaagacaaaggtggcgtttgatttctctc |
116 |
Q |
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| T |
40511124 |
acatggaaccaaaaacttccttataaatgaatataaatttgatgtctaatgacttactcctcgaactagttcaagacaaaggtggcgtttgatttctctc |
40511223 |
T |
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| Q |
117 |
ctaagatccagaggaagtcctttgagcagatcttcttcttctactcctcgtgtagccacccatttatattgattatatttacgaatagactctcttagtt |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40511224 |
ctaagatccagcggaagtcctttgagcagatcttcttcttctactcctcgtgtagccacccatttatattgattatatttacgaatagactctcttagtt |
40511323 |
T |
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| Q |
217 |
ctggagggagttgcctgtgatgcatccattgttctgtatcagttcttctcac |
268 |
Q |
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| T |
40511324 |
ctggagggagttgcctgtgatgcatccattgttctgtatcagttcttttcac |
40511375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 66 - 263
Target Start/End: Complemental strand, 21613331 - 21613134
Alignment:
| Q |
66 |
tgacttactcctcgaactagttcaagacaaaggtggcgtttgatttctctcctaagatccagaggaagtcctttgagcagatcttcttcttctactcctc |
165 |
Q |
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||||| |||| |||||||||||||||||||||||||||||| || ||||| | |||||||| ||||||||| |||| ||| |||||| ||||| |||| |
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| T |
21613331 |
tgactcactcttcgaactagttcaagacaaaggtggcgtttaatgtctcttcgaagatccaatggaagtcctctgagaagagattcttcatctacgcctc |
21613232 |
T |
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| Q |
166 |
gtgtagccacccatttatattgattatatttacgaatagactctcttagttctggagggagttgcctgtgatgcatccattgttctgtatcagttctt |
263 |
Q |
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||||||| | |||||||||||||| || ||||| | || | |||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
21613231 |
gtgtagctatccatttatattgatcgtacttacgcacggattgtcttagttcttgaggtagttgtctgtgatgcatccattgttctgtgtcagttctt |
21613134 |
T |
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