View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_high_31 (Length: 257)
Name: NF21413_high_31
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_high_31 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 4082414 - 4082657
Alignment:
| Q |
17 |
gtgaatgactgcaacagctgatatcacagtgtgtttaacacttgt---ctcgttcaggtatcgcaaaacatctttgtcaagttgagaacagagtagagca |
113 |
Q |
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| T |
4082414 |
gtgaatgactgcaacaactgatatcacagtgtgtttaacacttgtgtgctcgttcaggtatcgcaaaacatctttgtcaagttgagaacagagtagagca |
4082513 |
T |
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| Q |
114 |
ccaaatgccataacaactctcacacagatagattcaaagatctgaaaacactccctcatctcaacatgagggtcttcaagagtctggacaacagccattg |
213 |
Q |
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| T |
4082514 |
ccaaatgccataacaactctcacacagatagattcaaagatctgaaaacgctccctcatctcaacatgagggtcttcaagagtctggacaacagccattg |
4082613 |
T |
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| Q |
214 |
aaatttgaaagtttcttccggctccggcttccgttggtttgtgt |
257 |
Q |
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| T |
4082614 |
aaatttgaaagtttcttccgactccggcttccattggtttgtgt |
4082657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 4092123 - 4092366
Alignment:
| Q |
17 |
gtgaatgactgcaacagctgatatcacagtgtgtttaacacttgt---ctcgttcaggtatcgcaaaacatctttgtcaagttgagaacagagtagagca |
113 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092123 |
gtgaatgactgcaacagctgatatcacagtttgtttaacacttatgtgctagttcaggtatcgcaaaacatctttgtcaagttgagaacagagtagagca |
4092222 |
T |
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| Q |
114 |
ccaaatgccataacaactctcacacagatagattcaaagatctgaaaacactccctcatctcaacatgagggtcttcaagagtctggacaacagccattg |
213 |
Q |
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| T |
4092223 |
ccaaatgccataacaactctcacacagatagattcaaagatcttaaaacgctccctcatctcaacatgagggtcttcaagagtctggacaacatccattg |
4092322 |
T |
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| Q |
214 |
aaatttgaaagtttcttccggctccggcttccgttggtttgtgt |
257 |
Q |
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| T |
4092323 |
aaatttgaaagtttcttccggctccggcttccattggtttgtgt |
4092366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 4086563 - 4086605
Alignment:
| Q |
17 |
gtgaatgactgcaacagctgatatcacagtgtgtttaacactt |
59 |
Q |
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| T |
4086563 |
gtgaatgactgcaacaactgatatcacagtgtgtttaacactt |
4086605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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