View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_high_39 (Length: 227)
Name: NF21413_high_39
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_high_39 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 44455502 - 44455728
Alignment:
| Q |
1 |
agagctcacaattttctcgcggtccaaatcactatttgacaaaaaatgatcgcaaattagtctctgacattttcacactgaggacgaattagtcactaac |
100 |
Q |
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| T |
44455502 |
agagttcacaattttctcgcggtccaaatcactatttgacaaaaaatgatcgcaaattagtctctgacattttcacactgaggacgaattagtcactaac |
44455601 |
T |
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| Q |
101 |
tcataatatcagagggcctcatttgtctccaatctgaaaatgtcagtgattaatttaggtttannnnnnngttagggactgagttgagcattgagaaaat |
200 |
Q |
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| T |
44455602 |
tcataatatcagagggcttcatttgtctccaatctaaaaatgtcagtgattaatttaggtttatttttttgttagggactgagttgtgcagccagaaaat |
44455701 |
T |
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| Q |
201 |
tgtgagggactgagttgggtcttccct |
227 |
Q |
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| T |
44455702 |
tgtgagggactgagttgggtcttccct |
44455728 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 32358652 - 32358560
Alignment:
| Q |
53 |
caaattagtctctgacattttcacactgaggacgaattagtcactaactcataatatcagagggcctcatttgtctccaatctgaaaatgtca |
145 |
Q |
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| T |
32358652 |
caaattagtcgctaacatttttacactgaaggcaaattagtccccggctcattataacagagggacttatttgtccccaatttgaaaatgtca |
32358560 |
T |
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