View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_low_1 (Length: 672)
Name: NF21413_low_1
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 5 - 652
Target Start/End: Complemental strand, 45705861 - 45705209
Alignment:
| Q |
5 |
tgatatgaagagaaatagaatacatctatagagtataaaaaacaacataatttttacccttatgttgaaactcattaaatatatcatttaggaatagttg |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45705861 |
tgatatgaagagaaatagaatacatctatagagtataaacaacaccataatctttacccttatgttgaaactcattaaatatatcatttaggaatagttg |
45705762 |
T |
|
| Q |
105 |
tctacaccacatctcatttgacaaaataaatttacatgaatttagcaagtgatgcacaagtaataagttttacctggtttcccctaccatttttaattaa |
204 |
Q |
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| T |
45705761 |
tctacaccacatctcatttgacaaaataattttacatgaatttagcaagtgatgcacaagtaataagttttacctggtttcccctaccattttgaattaa |
45705662 |
T |
|
| Q |
205 |
gaatgcaatttgctccttcaaaatat-----caatttgtgaaacgtactcctaaagtgcatcgatttcaatttgcatttttataatcttctaattagtct |
299 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45705661 |
gaatgcaatttgctccttcaaaatataatatcaatttgtgaaacgtactcctaaagtgcatcgatttcaatttgcatttttataatcttctaattagtct |
45705562 |
T |
|
| Q |
300 |
cggaggaagaagttggtcttgtagcatgaacgttggacctcattgcatgtttgtgaagattgtataaactttccaccagatcttggttcacgttttttat |
399 |
Q |
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| T |
45705561 |
cggaggaagaagttggtcttgtagcatgaacgttggacctcattgcatgtttgtgaagattgtacaaactttccaccagatcttggttcacgttttttat |
45705462 |
T |
|
| Q |
400 |
tcacagacgtagaacttgtatcatattttatcttctctgcaacagcaatcgacattggaaacctgtttcgatccaagagatgcatatgatcagtccatgc |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45705461 |
tcacagacgtagaacttgtatcatattttatcttctctgcaacagcaattgacattggaaacctgtttcgatccaagagatgcatatgatcggtccatgc |
45705362 |
T |
|
| Q |
500 |
cgcgaaataacgaaagtactgaggatagtcactggcacaaattggttccaccgtatctgcaaattttagagcttcagcacgcaaaaatctttcataaatt |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45705361 |
cgcgaaataacgaaagtactgaggatagtcactggcacaaattgcttccaccgtatctgcaaattttagagcttcagcacgcaaaaatctttcataaatt |
45705262 |
T |
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| Q |
600 |
actggtgattttgtcattatcaatgactcaaaaataattgtaaagctgctcat |
652 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45705261 |
actggtgattttgtcattatcaatgactcaaaaataattgtaaagctgctcat |
45705209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 29402781 - 29402817
Alignment:
| Q |
172 |
ttttacctggtttcccctaccatttttaattaagaat |
208 |
Q |
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| T |
29402781 |
ttttacctggtttcccctagcatttttcattaagaat |
29402817 |
T |
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