View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_low_10 (Length: 516)
Name: NF21413_low_10
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_10 |
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| [»] scaffold0247 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 7 - 492
Target Start/End: Complemental strand, 15080551 - 15080058
Alignment:
| Q |
7 |
gagagaagaaccaagag----ctaccgatcgattttcttaaggtaagggg-ttggatacttattctcgtaatcgcttttctttttgatctggcttacgtt |
101 |
Q |
| |
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||||||||||||||||| || | |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||| |
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| T |
15080551 |
gagagaagaaccaagagagaactgcagatcgattttcttaaggtaagggggttggatacttattctcg-aatcacttttctttttgatctagcttacgtt |
15080453 |
T |
|
| Q |
102 |
taaatgttgaattgatgaattgatgattttgtttggtgaattttatgccgttaatttatgtgcaaatttgggtatgtgattatttgtgttcttggttttt |
201 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080452 |
taaatgttgaattgatgaattgctgattttgtttggtgaattttatgccgttaatttatgtgcaaatttgggtatgtgattatttgtgttcttggttttt |
15080353 |
T |
|
| Q |
202 |
gtttgtatcgttgtttattatatcgtgatattcaattctctcctag----tgtgttctggattgttgcgtgtcactgtttgttcaaggttgctatgtgaa |
297 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080352 |
gtttgtattgttgtttattatgtcgtgatattcaattctctcctagctagtgtgttctggattgttgcgtgtcactgtttgttcaaggttgctatgtgaa |
15080253 |
T |
|
| Q |
298 |
cgatggatgttgtctttgattgccgtttagccatattcactagttagattaacgaagactttgagatatgaaattgggattatgtgaccactgattgata |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080252 |
cgatggatgttgtctttgattgccgtttagccatattcactagttagattaacgaagactttgagatatgaaattgggattatgtgaccactgattgata |
15080153 |
T |
|
| Q |
398 |
taaggggcgttaattgttaataagtgcctattatatgttgatttcaaatacactcttgtcctgtttccaattccacgttttctttttaattcatg |
492 |
Q |
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| T |
15080152 |
taaggggcgttaattgttaaaaagtgcctattatatgttgatttcaaatacactcttgtgctgtttccaattccacgttttctttttaattcatg |
15080058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 473
Target Start/End: Complemental strand, 13516034 - 13515560
Alignment:
| Q |
7 |
gagagaagaacca----agagctaccgatcgattttcttaaggtaa-ggggttggatacttattctcgtaatcgcttttctttttgatctggcttacgtt |
101 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||| || |
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| T |
13516034 |
gagagaagaaccaagagagagctgccgatcgattttcttaaggtaagggggttggatacttattctcgtaatcacttttc-ttttgatctagcttacatt |
13515936 |
T |
|
| Q |
102 |
taaatgttgaattgatgaattgatgattttgtttggtgaattttatgccgttaatttatgtgcaaatttgggtatgtgattatttgtgttcttggttttt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13515935 |
taaatgttgaattgatgaattgatgattttgtttggtgaattttatgcccttaatttatgtgcaaatttgggtatgtgattatttgtgttcttggttttt |
13515836 |
T |
|
| Q |
202 |
gtttgtatcgttgtttattatatcgtgatattcaattctctc----ctagtgtgttctggattgttgcgtgtcactgtttgttcaaggttgctatgtgaa |
297 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13515835 |
gtttgtattgttgtttattatgtcgtgatattcaattctctcctagctagtgtgttctggattgttgcgtgtcactgtttgttcaaggttgctatgtgaa |
13515736 |
T |
|
| Q |
298 |
cgatggatgttgtctttgattgccgtttagccatattcactagttagattaacgaagactttgagatatgaaattgggattatgtgaccactgattgata |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13515735 |
cgatggatgttgtctttgattgccgtttagccatattcactagttagattaacgaagactttgagatatgaaattgggattatgtgaccactgattgata |
13515636 |
T |
|
| Q |
398 |
taaggggcgttaattgttaataagtgcctattatatgttgatttcaaatacactcttgtcctgtttccaattccac |
473 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13515635 |
taaggggcgttaattgttaaaaagtgcctattatatgttgatttcaaatacactcttgtgctgtttccaattccac |
13515560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 15684615 - 15684976
Alignment:
| Q |
20 |
agagctaccgatcgattttcttaaggtaagggg-ttggatacttattctcgtaatcgcttttctttttgatctggcttacgtttaaatgttgaattgatg |
118 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||| |||||||||||||| || || |
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| T |
15684615 |
agagctgccgatcgattttcttaaggtaagggggttggatacttattctcataaacaattttctttttgatctagcttacgtttaaat-------tgttg |
15684707 |
T |
|
| Q |
119 |
aattgatgattttgtttggtgaattttatgccgttaatttatgtgcaaatttgggtatgtgattatttgtgttctt-ggtttttgtttgtatcgttgttt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
15684708 |
aattgatgattttgtttggtgaattttatgcccttaatttatgtgcaaatttgggtatgtgattatttgtgttctttggtttttgtttgtattgttgttt |
15684807 |
T |
|
| Q |
218 |
attatatcgtgatattcaattctctcctagtgtgttctggattgttgcgtgtcactgtttgttcaaggttgctatgtgaacgatggatgttgtctttgat |
317 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15684808 |
attatgtcgtgatattcaattctctcctagtgtgttctggattgttgcgtgtcactgtttgttcaaggttgctatgtgaacgatggatgttgtctttgat |
15684907 |
T |
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| Q |
318 |
tgccgtttagccatattcactagttagattaacgaagactttgagatatgaaattgggattatgtgacc |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15684908 |
tgccgtttagccatattcactagttagattaacgaagactttgatatatgaaattgggattatgtgacc |
15684976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 382 - 492
Target Start/End: Original strand, 15687375 - 15687486
Alignment:
| Q |
382 |
tgaccactgattgatataaggggcgttaattgttaataagtgcctattatatgttgatttcaaatacactcttgtcctgtt-tccaattccacgttttct |
480 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
15687375 |
tgaccactgattgatataaggggcgttaattgttaaaaagtgcctattatatgttgatttcaaatacactcttgtgctgttatccaattccacgttttct |
15687474 |
T |
|
| Q |
481 |
ttttaattcatg |
492 |
Q |
| |
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|||||||||||| |
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| T |
15687475 |
ttttaattcatg |
15687486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 32655755 - 32655676
Alignment:
| Q |
218 |
attatatcgtgatattcaattctctcctagtgtgttctggattgttgcgtgtcactgtttgttcaaggttgctatgtgaa |
297 |
Q |
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|||||||||| |||| ||||||||| || |||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
32655755 |
attatatcgttatatacaattctctactggtgtgttctggattgttgtgcaacactgtttgttcaaggttgctatgtgaa |
32655676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 1360 - 1395
Alignment:
| Q |
106 |
tgttgaattgatgaattgatgattttgtttggtgaa |
141 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
1360 |
tgttgaattgatgaattgatgattttgttttgtgaa |
1395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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