View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21413_low_11 (Length: 509)
Name: NF21413_low_11
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 28536395 - 28536849
Alignment:
| Q |
1 |
aagatgacactttaccttctcatgtgtaaattacacatgagtgaatccatttcatcagtataaagtaatgctctgaaatttcaaaaccaaaaaccagact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536395 |
aagatgacactttaccttctcatgtgtaaattacacatgagtgaattcatttcatcagtataaagtaatgctctgaaatttcaaaaccaaaaaccagact |
28536494 |
T |
|
| Q |
101 |
cgagagtatgataatgtgtggttgatagatgaaacggctgaggttgagcgtgcgaagaaagcaagaaggaagaacgacacaaaaagtttgtagatgtcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536495 |
cgagagtatgataatgtgtggttgatagatgaaacggctgacgttgagcgtgcgaagaacgcaagaaggaagaacgacacaaaaagtttgtagatgtcat |
28536594 |
T |
|
| Q |
201 |
atagtactttcattctcctcaacacaatgaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaaacattacgtgtttcgaaactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536595 |
atagtactttcattctcctcaacacaataaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaaacattacgtgtttcgaaactg |
28536694 |
T |
|
| Q |
301 |
gatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaaaccaaattcctatatattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28536695 |
gatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaaaccaaattcctgtatattt |
28536794 |
T |
|
| Q |
401 |
gtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536795 |
gtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
28536849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 389 - 497
Target Start/End: Original strand, 28536833 - 28536941
Alignment:
| Q |
389 |
tcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
488 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536833 |
tcctgtatattaatcattgatgaaaaaataaaaggtgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
28536932 |
T |
|
| Q |
489 |
cacaggttc |
497 |
Q |
| |
|
||||||||| |
|
|
| T |
28536933 |
cacaggttc |
28536941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 54492190 - 54492156
Alignment:
| Q |
7 |
acactttaccttctcatgtgtaaattacacatgag |
41 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
54492190 |
acactttaccttctcatgtgaaaattacacatgag |
54492156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University