View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21413_low_15 (Length: 444)

Name: NF21413_low_15
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21413_low_15
NF21413_low_15
[»] chr3 (7 HSPs)
chr3 (8-426)||(19766424-19766823)
chr3 (8-272)||(17682304-17682572)
chr3 (303-426)||(17682182-17682305)
chr3 (362-407)||(19881742-19881787)
chr3 (362-407)||(37982797-37982842)
chr3 (362-407)||(31685508-31685553)
chr3 (362-407)||(53972917-53972962)
[»] chr6 (8 HSPs)
chr6 (41-188)||(15434073-15434219)
chr6 (199-280)||(15434298-15434379)
chr6 (127-196)||(10093072-10093141)
chr6 (127-196)||(33044884-33044953)
chr6 (362-407)||(10092917-10092962)
chr6 (256-339)||(33044986-33045069)
chr6 (362-407)||(33045077-33045122)
chr6 (295-339)||(10092970-10093014)
[»] chr4 (6 HSPs)
chr4 (27-196)||(22292033-22292201)
chr4 (199-272)||(22292289-22292362)
chr4 (260-339)||(29862905-29862984)
chr4 (127-182)||(29862802-29862857)
chr4 (363-407)||(29862993-29863037)
chr4 (195-227)||(7135469-7135501)
[»] chr2 (4 HSPs)
chr2 (351-424)||(32277426-32277499)
chr2 (362-407)||(23348611-23348656)
chr2 (362-407)||(12742133-12742178)
chr2 (364-407)||(18354946-18354989)
[»] chr8 (8 HSPs)
chr8 (258-407)||(14677564-14677698)
chr8 (127-196)||(5658370-5658439)
chr8 (127-196)||(14677460-14677529)
chr8 (127-196)||(31100310-31100379)
chr8 (362-407)||(31100503-31100548)
chr8 (256-339)||(5658254-5658337)
chr8 (362-407)||(5658201-5658246)
chr8 (256-339)||(31100412-31100495)
[»] scaffold0045 (3 HSPs)
scaffold0045 (127-196)||(11072-11141)
scaffold0045 (362-407)||(11265-11310)
scaffold0045 (264-333)||(11182-11251)
[»] chr7 (3 HSPs)
chr7 (362-407)||(1262534-1262579)
chr7 (362-407)||(43071013-43071058)
chr7 (362-407)||(48849413-48849458)
[»] chr5 (3 HSPs)
chr5 (362-407)||(7473120-7473165)
chr5 (362-407)||(30442177-30442222)
chr5 (362-407)||(9044247-9044292)
[»] scaffold0035 (3 HSPs)
scaffold0035 (127-195)||(35676-35744)
scaffold0035 (256-339)||(35559-35642)
scaffold0035 (362-397)||(35516-35551)
[»] scaffold0596 (1 HSPs)
scaffold0596 (362-407)||(1099-1144)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 19766823 - 19766424
Alignment:
Q  8 tgagatgaaactgaatcgccaactatgaccttattctcgtcagagacctaaatctgattatgttgtgaacctaattgcaaatttattaacaataatgaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||    
T  19766823 tgagatgaaactgaatcgccaactatgaccttattctcgtcagagacctaaatctgattatgttgtgaacctaa---------------------tgaat 19766745  T
Q  108 ggaattgaagaaacaactgagaggtggatagtg--attaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagagcattgttga 205  Q
    |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19766744 ggaattgaagaaacaactgagaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgagagcattgttga 19766645  T
Q  206 tgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctctttattcggagtggcatgtttttgttggaaaaattg 305  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19766644 tgaatggagagagcaacgacaggagcttccaatcgagattgcaaatttccatggcttctttctctttattcggggtggcatgtttttgttggaaaaattg 19766545  T
Q  306 tgcggttctttttgcttgtctgtctgatacgatgatgcatacggtggcggggaagtcgacaacggcgaaggtgatgtcggaatcgagagcattggtgaag 405  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19766544 tgcggttctttttgcttgtctagctgatacgatgatgcatacggtggcggggaagtcgacaacggcgaaggtgatgtcggaatctagagcattggtgaag 19766445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 17682572 - 17682304
Alignment:
Q  8 tgagatgaaactgaatcgccaactatgaccttattctcgtcagagacctaaatctgattatgttgtgaacctaattgcaaatttattaacaataatgaat 107  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  17682572 tgagatgaaactgaatcgtcaactatgaccctattctcgtcagagacccaaatctgactgtgttgtgaacctaattgcaaatttattaccaataatgaat 17682473  T
Q  108 ggaattgaagaaacaac----tgagaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagagcattgtt 203  Q
    ||||||||||||||||     ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  17682472 ggaattgaagaaacaatatattgagaggtggagagtgattaatctcaaaacacaattcaattcatagaaagggaaaaacgattaccttgagagcattgtt 17682373  T
Q  204 gatgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctcttt 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17682372 gatgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctcttt 17682304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 303 - 426
Target Start/End: Complemental strand, 17682305 - 17682182
Alignment:
Q  303 ttgtgcggttctttttgcttgtctgtctgatacgatgatgcatacggtggcggggaagtcgacaacggcgaaggtgatgtcggaatcgagagcattggtg 402  Q
    ||||||||||||||||||||||||| |||||||||||  ||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  17682305 ttgtgcggttctttttgcttgtctggctgatacgatgccgcagacggtggtgggaaagtcgacaacggcaaaggtgatgtcggaatcgagagcattggtg 17682206  T
Q  403 aaggggagtgggaggagaaaagac 426  Q
    ||||||| ||||||||||||||||    
T  17682205 aaggggaatgggaggagaaaagac 17682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 19881742 - 19881787
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  19881742 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 19881787  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 37982842 - 37982797
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  37982842 cgacaacgacgaaggtgatgtcggaatcgagagcattggtgaaggg 37982797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 31685553 - 31685508
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  31685553 cgacaacggcgaaggtgatgtcggaatcgatatcattggtgaaggg 31685508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 53972917 - 53972962
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  53972917 cgacaacgacgaaagtgatgtcggaatcgagagcattggtgaaggg 53972962  T

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Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 15434073 - 15434219
Alignment:
Q  41 ttctcgtcagagacctaaatctgattatgttgtgaacctaattgcaaatttattaacaataatgaatggaattgaagaaacaactgagaggtggatagtg 140  Q
    ||||| ||||||||| |||||||||| ||||||||| |||||||||||||||  || | ||||||||||||||||||||||||||||||||||||  |||    
T  15434073 ttctcatcagagacccaaatctgattctgttgtgaatctaattgcaaatttacaaa-attaatgaatggaattgaagaaacaactgagaggtggagggtg 15434171  T
Q  141 attaaactcaaaacacaattcatttcatagaaagggaaaagcgattac 188  Q
    |||| ||| ||||||||||||| | | |||||||||||||||||||||    
T  15434172 attagactaaaaacacaattcaatacgtagaaagggaaaagcgattac 15434219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 15434298 - 15434379
Alignment:
Q  199 ttgttgatgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctctttattcggag 280  Q
    |||||||||||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||| ||||||||| |||||||    
T  15434298 ttgttgatgaagggagagagcaacgatgggagcccccacttgagattgcaaatttccatggcttatttctcttttttcggag 15434379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 10093141 - 10093072
Alignment:
Q  127 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 196  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  10093141 agaggtggagagtgattagactcaaaacacaattcaattcatagaaagggaaaagctattaccttgagag 10093072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 33044884 - 33044953
Alignment:
Q  127 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 196  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||| |||||| ||||||    
T  33044884 agaggtggagagtgattagactcaaaacacaattcaattcatagaaaaggaaaagctattaccttgagag 33044953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 10092962 - 10092917
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  10092962 cgacaacgacgaaggtgatgtcggaatcgagagcattggtgaaggg 10092917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 33044986 - 33045069
Alignment:
Q  256 atggcttctttctctttattcggagtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctgtctgatacgatg 339  Q
    |||||||||||||||||||  ||||||||| ||||| | |||||||||||||  |||||||||| ||| |||  ||||||||||    
T  33044986 atggcttctttctctttatctggagtggcaggttttaggtggaaaaattgtgttgttctttttgtttgcctggatgatacgatg 33045069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 33045077 - 33045122
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||    
T  33045077 cgacaacgacgaaggtgatgttggaatcgagagcattggtgaaggg 33045122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 10093014 - 10092970
Alignment:
Q  295 tggaaaaattgtgcggttctttttgcttgtctgtctgatacgatg 339  Q
    |||||||||||||| |||||||||| ||| ||| |||||||||||    
T  10093014 tggaaaaattgtgctgttctttttgtttgcctggctgatacgatg 10092970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 22292033 - 22292201
Alignment:
Q  27 caactatgaccttattctcgtcagagacctaaatctgattatgttgtgaacctaattgcaaatttattaacaataatgaatggaattgaagaaacaactg 126  Q
    ||||||| ||| | ||||| |||||| || |||| ||||| ||||||||| |||||||||||||||  || | ||||||||| |||||||||||||||||    
T  22292033 caactattaccctgttctcatcagagccccaaatgtgattgtgttgtgaatctaattgcaaatttacaaa-attaatgaatgcaattgaagaaacaactg 22292131  T
Q  127 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 196  Q
    ||||||||| ||| |||| ||| ||||||||||||| | |||||||||||||||||||||||| ||||||    
T  22292132 agaggtggagagtaattagactaaaaacacaattcaatacatagaaagggaaaagcgattaccttgagag 22292201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 22292289 - 22292362
Alignment:
Q  199 ttgttgatgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctcttt 272  Q
    ||||||||||| |||||||||||||| |||||| |||| | ||||||||||||||||||||||| |||||||||    
T  22292289 ttgttgatgaacggagagagcaacgatgggagcctccacttgagattgcaaatttccatggcttatttctcttt 22292362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 29862905 - 29862984
Alignment:
Q  260 cttctttctctttattcggagtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctgtctgatacgatg 339  Q
    |||||||||||||||  ||||||||| ||||| | |||||||||||||  |||||||||| ||| ||| |||||||||||    
T  29862905 cttctttctctttatatggagtggcaggttttaggtggaaaaattgtgttgttctttttgtttgcctggctgatacgatg 29862984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 29862802 - 29862857
Alignment:
Q  127 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagc 182  Q
    ||||||||| |||||||| ||||| ||||||||||| ||||||||||| |||||||    
T  29862802 agaggtggagagtgattagactcataacacaattcaattcatagaaagagaaaagc 29862857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 29862993 - 29863037
Alignment:
Q  363 gacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||| || |||||||||||||||||||||| |||||||||    
T  29862993 gacaacggcaaaagtgatgtcggaatcgagagcatcggtgaaggg 29863037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 7135501 - 7135469
Alignment:
Q  195 agcattgttgatgaagggagagagcaacgacgg 227  Q
    |||||||||||||||||||||||| ||||||||    
T  7135501 agcattgttgatgaagggagagagaaacgacgg 7135469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 32277499 - 32277426
Alignment:
Q  351 ggcggggaagtcgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggggagtgggaggagaaaag 424  Q
    ||||||||||||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||||||    
T  32277499 ggcggggaagtcgacaacggcgaggatgatgtcggaatcgagagaatcggtgaaggggagtgggaggagaaaag 32277426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 23348611 - 23348656
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23348611 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 23348656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 12742178 - 12742133
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  12742178 cgacaacgacgaaggtgatgtcggaatcgagagcattggtgaaggg 12742133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 18354946 - 18354989
Alignment:
Q  364 acaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  18354946 acaacagcgaaggtgatgtcggaatcgagagcattggtgaaggg 18354989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 407
Target Start/End: Original strand, 14677564 - 14677698
Alignment:
Q  258 ggcttctttctctttattcggagtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctgtctgatacgatgatgcatacggtggcgggg 357  Q
    |||||||||||||||||  ||||||||| ||||| | |||||||||||||  |||||||||| ||| ||| ||||||||||| |||| |||             
T  14677564 ggcttctttctctttatatggagtggcaggttttaggtggaaaaattgtgttgttctttttgtttgcctggctgatacgatgctgcagacg--------- 14677654  T
Q  358 aagtcgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
          ||||||||||||||||||||||||||||||||||||||||||||    
T  14677655 ------acaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 14677698  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 5658439 - 5658370
Alignment:
Q  127 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 196  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  5658439 agaggtggagagtgattagactcaaaacacaattcaattcatagaaagggaaaagctattaccttgagag 5658370  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 14677460 - 14677529
Alignment:
Q  127 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 196  Q
    ||||||||| |||||||  ||||| ||||||||||| ||||||||||||||||||| |||||| ||||||    
T  14677460 agaggtggagagtgattggactcagaacacaattcaattcatagaaagggaaaagctattaccttgagag 14677529  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 31100310 - 31100379
Alignment:
Q  127 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 196  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||| | |||||| |||||| ||||||    
T  31100310 agaggtggagagtgattagactcaaaacacaattcaattcatagaaaagaaaaagctattaccttgagag 31100379  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 31100503 - 31100548
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  31100503 cgacaacggcgaaggtgatgttggaatcgagagcattggtgaaggg 31100548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 5658337 - 5658254
Alignment:
Q  256 atggcttctttctctttattcggagtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctgtctgatacgatg 339  Q
    |||||||||||||||||||  ||||||||| ||||| | ||||||| |||||  |||||||||| |||||||  ||||||||||    
T  5658337 atggcttctttctctttatctggagtggcaggttttaggtggaaaagttgtgttgttctttttgtttgtctggatgatacgatg 5658254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 5658246 - 5658201
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  5658246 cgacaacggcgaaggtgatgttggaatcaagagcattggtgaaggg 5658201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 31100412 - 31100495
Alignment:
Q  256 atggcttctttctctttattcggagtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctgtctgatacgatg 339  Q
    |||||||||||||||||||  |||||||||  |||| | |||||||||||||  |||||||||| ||| |||  ||||||||||    
T  31100412 atggcttctttctctttatctggagtggcagattttaggtggaaaaattgtgttgttctttttgtttgcctggatgatacgatg 31100495  T

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Target: scaffold0045 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 11072 - 11141
Alignment:
Q  127 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 196  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  11072 agaggtggagagtgattagactcaaaacacaattcaattcatagaaagggaaaagctattaccttgagag 11141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 11265 - 11310
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  11265 cgacaacggcgaaggtgatgtcggattcgagagcattggtgaaggg 11310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 11182 - 11251
Alignment:
Q  264 tttctctttattcggagtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctgtctgat 333  Q
    |||||||||||  ||||||||| ||||| | |||||||||||||  |||||||||| ||| ||| |||||    
T  11182 tttctctttatctggagtggcaagttttaggtggaaaaattgtgttgttctttttgtttgcctggctgat 11251  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 1262579 - 1262534
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1262579 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 1262534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 43071013 - 43071058
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43071013 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 43071058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 48849413 - 48849458
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48849413 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 48849458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 7473120 - 7473165
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7473120 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 7473165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 30442177 - 30442222
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  30442177 cgacaacggccaaggtgatgtcggaatcgagagcattggtgaaggg 30442222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 9044292 - 9044247
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  9044292 cgacaacgacgaaggtgatgtcgaaatcgagagcattggtgaaggg 9044247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 35744 - 35676
Alignment:
Q  127 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgaga 195  Q
    ||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||| |||||| |||||    
T  35744 agaggtggagagtgattagactcagaacacaattcaattcatagaaagggaaaagctattaccttgaga 35676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 35642 - 35559
Alignment:
Q  256 atggcttctttctctttattcggagtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctgtctgatacgatg 339  Q
    |||||||||||||||||||  ||||||||| ||||| | |||||||||||||  |||||||||| ||| ||| |||||||||||    
T  35642 atggcttctttctctttatatggagtggcaggttttaggtggaaaaattgtgttgttctttttgtttgcctggctgatacgatg 35559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 35551 - 35516
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcat 397  Q
    |||||||||||||||||||||| |||||||||||||    
T  35551 cgacaacggcgaaggtgatgtcagaatcgagagcat 35516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 1144 - 1099
Alignment:
Q  362 cgacaacggcgaaggtgatgtcggaatcgagagcattggtgaaggg 407  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  1144 cgacaacggcgaaagtgatgtcggaatcgagagcattggtgaaggg 1099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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