View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21413_low_17 (Length: 431)
Name: NF21413_low_17
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 40546781 - 40546377
Alignment:
| Q |
17 |
agaaatttgaaagcctgaatagtagatctggtgtgaatatgtctgcacccacacccaaatagaaattttcactacatactagattttagtattgctcaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40546781 |
agaaatttgaaagcctgaatagtagatttggtgtgaatatgtctgcacccacacccaaatagaaattttcactacatactagattttagtattgctcaat |
40546682 |
T |
|
| Q |
117 |
taagcacatcaatataacagcaacaccaataggctcaaaacttttatttaatacttcatatatatcttcaatttgcatttgttgattaccatattatctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40546681 |
taagcacatcaatataacagcaacaccaataggctcaaaatttttatttaatacttcatatatatcttcaatttgcatttgttgattaccatattatctc |
40546582 |
T |
|
| Q |
217 |
tgcagaaataattaccttgtggcggaagcaaagtagagatgcagggaagaaaaaactcgagtgaaaatactaaagggagataaaatagcgacaacgggtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40546581 |
tgcagaaataattaccttgtggcggaagcaaagtagagatgcagggaagaaaaaacttgagtgaaaatactaaagggagataaaatagcgacaacgggtt |
40546482 |
T |
|
| Q |
317 |
aaaataggcttgaatagggttggataagaatatgcatctgctagtaaggaagcagataagttacaaccaacaaagtcacaaaaattgcttttaagacaag |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40546481 |
aaaataggcttgaatagggttggataagaatatgcatctgctagtaaggaagcagataagttacaaccaacaaagtcacaaaaattgcttttaagacaaa |
40546382 |
T |
|
| Q |
417 |
tataa |
421 |
Q |
| |
|
||||| |
|
|
| T |
40546381 |
tataa |
40546377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 21423732 - 21423795
Alignment:
| Q |
163 |
tttaatacttcatatatatcttcaatttgcatttgttgattaccatattatctctgcagaaata |
226 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||| ||||||||| |||||| |||||||| |
|
|
| T |
21423732 |
tttaatacttcgtttatatcttcaatttgcatgtgtttattaccatactatctcaccagaaata |
21423795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University