View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21413_low_19 (Length: 424)

Name: NF21413_low_19
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21413_low_19
NF21413_low_19
[»] chr1 (31 HSPs)
chr1 (17-292)||(15551813-15552089)
chr1 (43-268)||(26027710-26027935)
chr1 (44-250)||(40275156-40275362)
chr1 (11-267)||(27420539-27420796)
chr1 (32-267)||(11442509-11442747)
chr1 (36-261)||(22577135-22577364)
chr1 (32-202)||(29544186-29544356)
chr1 (11-254)||(3617632-3617878)
chr1 (32-247)||(17720763-17720982)
chr1 (131-254)||(18536107-18536230)
chr1 (32-254)||(15715637-15715840)
chr1 (131-254)||(37360083-37360206)
chr1 (132-250)||(31094077-31094195)
chr1 (32-180)||(146322-146474)
chr1 (152-254)||(33493968-33494069)
chr1 (131-254)||(11659102-11659225)
chr1 (148-252)||(27164394-27164498)
chr1 (262-357)||(6787199-6787294)
chr1 (302-358)||(4672796-4672853)
chr1 (302-358)||(6785353-6785410)
chr1 (302-358)||(7468160-7468217)
chr1 (302-358)||(28016951-28017008)
chr1 (265-335)||(15959871-15959940)
chr1 (302-358)||(6786734-6786791)
chr1 (302-358)||(44149039-44149096)
chr1 (131-188)||(49626063-49626120)
chr1 (302-358)||(16854032-16854092)
chr1 (302-336)||(46542878-46542912)
chr1 (314-358)||(45226046-45226091)
chr1 (263-291)||(43667543-43667571)
chr1 (308-336)||(44056512-44056540)
[»] chr7 (25 HSPs)
chr7 (94-358)||(20123886-20124150)
chr7 (32-268)||(34325304-34325540)
chr7 (11-258)||(7562184-7562432)
chr7 (32-269)||(22477837-22478073)
chr7 (32-254)||(16647438-16647641)
chr7 (134-254)||(341433-341553)
chr7 (32-254)||(25498068-25498271)
chr7 (149-254)||(32147493-32147597)
chr7 (131-254)||(8247009-8247132)
chr7 (32-254)||(571627-571830)
chr7 (32-254)||(17621799-17622002)
chr7 (152-254)||(42207932-42208033)
chr7 (17-96)||(20124418-20124498)
chr7 (32-254)||(42163196-42163399)
chr7 (156-254)||(26457665-26457763)
chr7 (150-254)||(44659746-44659843)
chr7 (308-358)||(44877795-44877845)
chr7 (263-358)||(25944435-25944530)
chr7 (148-252)||(25674045-25674149)
chr7 (32-131)||(32147598-32147696)
chr7 (303-358)||(11806752-11806807)
chr7 (302-335)||(18800932-18800965)
chr7 (302-335)||(30082276-30082309)
chr7 (302-335)||(47778669-47778702)
chr7 (308-336)||(25737825-25737853)
[»] chr2 (34 HSPs)
chr2 (32-267)||(16444303-16444542)
chr2 (11-263)||(11311037-11311290)
chr2 (32-268)||(19088450-19088685)
chr2 (32-266)||(25229784-25230022)
chr2 (32-267)||(19911255-19911491)
chr2 (32-254)||(21290409-21290635)
chr2 (32-268)||(7385753-7385976)
chr2 (32-254)||(635297-635500)
chr2 (32-254)||(7910904-7911107)
chr2 (32-254)||(14897798-14898001)
chr2 (32-254)||(22429361-22429564)
chr2 (32-254)||(22434955-22435158)
chr2 (131-254)||(43288526-43288649)
chr2 (32-254)||(1524747-1524950)
chr2 (32-254)||(43776005-43776208)
chr2 (131-254)||(25446196-25446319)
chr2 (172-254)||(14889709-14889791)
chr2 (148-252)||(19438688-19438792)
chr2 (134-254)||(17320688-17320808)
chr2 (131-250)||(33032686-33032806)
chr2 (266-358)||(45660223-45660316)
chr2 (131-198)||(105355-105422)
chr2 (264-358)||(19263959-19264053)
chr2 (302-358)||(25571941-25571998)
chr2 (302-358)||(28858206-28858263)
chr2 (302-358)||(33198841-33198898)
chr2 (308-358)||(5280687-5280738)
chr2 (308-358)||(11616926-11616977)
chr2 (311-358)||(44454869-44454916)
chr2 (302-336)||(14873857-14873891)
chr2 (308-348)||(45085191-45085232)
chr2 (302-338)||(13822967-13823003)
chr2 (302-357)||(29524248-29524304)
chr2 (302-357)||(38070912-38070968)
[»] chr4 (34 HSPs)
chr4 (11-268)||(13998949-13999207)
chr4 (11-246)||(26996168-26996404)
chr4 (11-268)||(22747966-22748219)
chr4 (32-268)||(2925106-2925342)
chr4 (32-233)||(12747512-12747714)
chr4 (32-254)||(53528647-53528873)
chr4 (17-249)||(19569508-19569737)
chr4 (132-254)||(25692307-25692429)
chr4 (32-254)||(53981108-53981311)
chr4 (131-254)||(12660323-12660446)
chr4 (149-254)||(20193633-20193737)
chr4 (131-254)||(1875132-1875255)
chr4 (131-254)||(16326851-16326974)
chr4 (131-254)||(30674837-30674960)
chr4 (131-254)||(23192986-23193109)
chr4 (263-358)||(17186982-17187077)
chr4 (32-181)||(26082204-26082347)
chr4 (264-335)||(2229135-2229206)
chr4 (32-80)||(20193534-20193581)
chr4 (267-335)||(55580527-55580595)
chr4 (311-358)||(10069600-10069648)
chr4 (302-357)||(16605036-16605092)
chr4 (265-356)||(39078016-39078107)
chr4 (308-358)||(4058615-4058666)
chr4 (176-251)||(9397587-9397662)
chr4 (319-358)||(17794745-17794784)
chr4 (308-358)||(35529572-35529623)
chr4 (302-357)||(50145651-50145706)
chr4 (108-167)||(13754947-13755010)
chr4 (131-181)||(26092007-26092057)
chr4 (145-194)||(25150230-25150279)
chr4 (302-358)||(48793826-48793883)
chr4 (311-358)||(30245038-30245086)
chr4 (10-89)||(46532719-46532799)
[»] scaffold0020 (1 HSPs)
scaffold0020 (32-268)||(122157-122393)
[»] chr8 (24 HSPs)
chr8 (37-268)||(23428265-23428496)
chr8 (11-268)||(10737965-10738209)
chr8 (32-268)||(28349282-28349523)
chr8 (32-252)||(8508965-8509184)
chr8 (32-252)||(17908822-17909050)
chr8 (132-254)||(30723132-30723254)
chr8 (131-254)||(30715353-30715476)
chr8 (131-252)||(29542314-29542435)
chr8 (302-358)||(13143659-13143716)
chr8 (266-358)||(34890382-34890474)
chr8 (308-358)||(28348513-28348563)
chr8 (302-358)||(4047102-4047159)
chr8 (302-358)||(24892733-24892790)
chr8 (302-358)||(35525493-35525550)
chr8 (302-358)||(36190666-36190723)
chr8 (302-357)||(13144170-13144226)
chr8 (303-358)||(29920479-29920535)
chr8 (308-358)||(30576035-30576086)
chr8 (302-336)||(8107850-8107884)
chr8 (308-357)||(33563719-33563769)
chr8 (11-80)||(16846659-16846731)
chr8 (303-336)||(43216586-43216619)
chr8 (307-358)||(374198-374250)
chr8 (308-336)||(41086587-41086615)
[»] chr6 (11 HSPs)
chr6 (11-252)||(19442027-19442263)
chr6 (32-268)||(17271038-17271278)
chr6 (87-269)||(14461647-14461829)
chr6 (32-249)||(6932028-6932251)
chr6 (11-176)||(25394783-25394949)
chr6 (32-254)||(14851657-14851860)
chr6 (134-243)||(6412074-6412184)
chr6 (172-250)||(19558025-19558104)
chr6 (140-254)||(34267112-34267226)
chr6 (43-216)||(19817596-19817767)
chr6 (303-357)||(5300782-5300836)
[»] scaffold0062 (3 HSPs)
scaffold0062 (32-267)||(18910-19149)
scaffold0062 (32-267)||(29078-29317)
scaffold0062 (32-267)||(39067-39306)
[»] chr5 (29 HSPs)
chr5 (32-268)||(18080801-18081037)
chr5 (121-268)||(24224206-24224353)
chr5 (96-268)||(17943599-17943776)
chr5 (131-254)||(16672406-16672529)
chr5 (131-254)||(35265678-35265801)
chr5 (32-254)||(1532607-1532810)
chr5 (32-125)||(24214232-24214325)
chr5 (149-254)||(28368022-28368126)
chr5 (41-254)||(30958473-30958668)
chr5 (131-254)||(21172323-21172446)
chr5 (148-254)||(23054529-23054635)
chr5 (117-179)||(29948735-29948797)
chr5 (302-358)||(42273546-42273603)
chr5 (32-80)||(28367924-28367971)
chr5 (105-145)||(29948696-29948736)
chr5 (267-358)||(8225326-8225417)
chr5 (302-358)||(9957623-9957680)
chr5 (32-80)||(17945010-17945058)
chr5 (267-358)||(20643877-20643968)
chr5 (302-356)||(12730196-12730251)
chr5 (302-356)||(12793016-12793071)
chr5 (308-338)||(2002331-2002361)
chr5 (308-348)||(842752-842793)
chr5 (267-358)||(32110864-32110956)
chr5 (220-268)||(29948820-29948868)
chr5 (302-357)||(34425227-34425283)
chr5 (264-292)||(37522832-37522860)
chr5 (303-358)||(38130323-38130379)
chr5 (303-335)||(39505463-39505495)
[»] scaffold0066 (1 HSPs)
scaffold0066 (32-268)||(10899-11129)
[»] chr3 (35 HSPs)
chr3 (32-261)||(17032101-17032333)
chr3 (63-268)||(44122824-44123028)
chr3 (44-203)||(13925570-13925733)
chr3 (150-267)||(13925453-13925570)
chr3 (136-267)||(10936102-10936233)
chr3 (32-254)||(9725625-9725828)
chr3 (32-254)||(23343391-23343594)
chr3 (149-254)||(2169691-2169795)
chr3 (134-246)||(21882331-21882443)
chr3 (131-251)||(49487861-49487981)
chr3 (131-254)||(15753632-15753755)
chr3 (32-254)||(13989847-13990050)
chr3 (152-254)||(13981666-13981767)
chr3 (266-358)||(6074947-6075040)
chr3 (135-254)||(20453623-20453747)
chr3 (32-131)||(13981564-13981662)
chr3 (48-131)||(26829971-26830054)
chr3 (266-358)||(14752374-14752466)
chr3 (266-358)||(6437944-6438038)
chr3 (134-186)||(52933600-52933652)
chr3 (32-131)||(2169592-2169690)
chr3 (305-358)||(9263910-9263964)
chr3 (48-186)||(52554486-52554629)
chr3 (302-358)||(7866649-7866706)
chr3 (302-358)||(28875307-28875364)
chr3 (303-358)||(37074860-37074916)
chr3 (303-358)||(46711825-46711881)
chr3 (303-358)||(50651203-50651259)
chr3 (302-356)||(32070161-32070215)
chr3 (302-358)||(54465057-54465114)
chr3 (264-292)||(21529845-21529873)
chr3 (311-358)||(31836862-31836910)
chr3 (302-357)||(38401294-38401350)
chr3 (311-358)||(50730016-50730064)
chr3 (311-358)||(50782788-50782836)
[»] scaffold0004 (1 HSPs)
scaffold0004 (32-254)||(346614-346817)
[»] scaffold0014 (1 HSPs)
scaffold0014 (131-254)||(110774-110897)
[»] scaffold0102 (1 HSPs)
scaffold0102 (131-254)||(10952-11074)
[»] scaffold0461 (1 HSPs)
scaffold0461 (32-254)||(13530-13733)
[»] scaffold0132 (2 HSPs)
scaffold0132 (303-358)||(910-966)
scaffold0132 (303-358)||(8870-8926)
[»] scaffold0009 (1 HSPs)
scaffold0009 (308-358)||(157697-157748)
[»] scaffold0774 (1 HSPs)
scaffold0774 (307-348)||(3614-3656)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 15552089 - 15551813
Alignment:
Q  17 aaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatcctt 115  Q
    |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15552089 aaatcgattataacaaattcattttcaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatcaaatcctt 15551990  T
Q  116 cagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  15551989 cagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttaatgtgctcctgaacttaatcaa 15551890  T
Q  216 gtaagaaaaagttcttgaattcccttcaggtgaatatgtgtctaaagaatatactccctccgtcccataatataagc 292  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15551889 gtaagaaaaagttcttgaattccctttaggtgaatatgtgtctaaagaatatactccctccgtctcataatataagc 15551813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 43 - 268
Target Start/End: Complemental strand, 26027935 - 26027710
Alignment:
Q  43 aatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatatatcactatcaag 142  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  26027935 aatccttaaaatggacaaatgatgtcatcttttcaataattttaataatatgtattactcaaatgaaatcgttcagggagtttcatatatcactatcaag 26027836  T
Q  143 tgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttc 242  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||    
T  26027835 tgagtcatacaaatatattgtagcacatctttcatataatttgagcctttcatgtgctattgaacttaatcaagtatgaaaaagttcttgaattcacttc 26027736  T
Q  243 aggtgaatatgtgtctaaagaatata 268  Q
    ||||||||| ||||||||| ||||||    
T  26027735 aggtgaatacgtgtctaaataatata 26027710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 40275156 - 40275362
Alignment:
Q  44 atccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatatatcactatcaagt 143  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  40275156 atccttaaaatggacaaatgatgtcatcttttcaataattttgatagtttgtgttacgcaaatgaaatccttcagggagtttcatatatcactatcaagt 40275255  T
Q  144 gagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttca 243  Q
    ||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  40275256 gagtcatataaataaattgtaactcatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttcttgaattcacttca 40275355  T
Q  244 ggtgaat 250  Q
    |||||||    
T  40275356 ggtgaat 40275362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 27420539 - 27420796
Alignment:
Q  11 atcatcaaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaa 109  Q
    ||||| |||| ||||||| || ||||||||| |||||||||||||||||||||||||||||| |||||||||| || ||||||||||| | |||||||||    
T  27420539 atcataaaatggattataacaaattcatttctaaatccttaaaatggacaaatgatgtcatcatttcaataattttgatagtatgtataacgcaaatgaa 27420638  T
Q  110 atccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaactt 209  Q
    |||| |||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  27420639 atccgtcagggagtttcatatatcattatcaagtgagtcatataaataaattgtaacacatctttcatataatttgagtctttcatgtgctattgaactt 27420738  T
Q  210 aatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgtgtctaaagaatat 267  Q
    |||||| || ||||||||  |||||||| |||||||||||||||| | ||||||||||    
T  27420739 aatcaaatatgaaaaagtgtttgaattcacttcaggtgaatatgtctttaaagaatat 27420796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 32 - 267
Target Start/End: Original strand, 11442509 - 11442747
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||  || ||||||||| ||| ||||||||| ||||||||||||||| |||||    
T  11442509 attcatttccatatccttaaaatggacaaatgatatcatcttttcaataactttgatagtatgtcttacgcaaatgaagtccttcagggagtttaatata 11442608  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaactta-atcaagtaagaaaaag 226  Q
        ||||||||||||||| |||||||||||||| || ||||||||| |||||||||||| |||||||||||||||||||||  ||  |||| |||||||    
T  11442609 atcatcactatcaagtgagtcatacaaatatattttagcacatcttttatataatttgagtctttcatgtgctactgaactttgat--agtatgaaaaag 11442706  T
Q  227 ttcttgaattcccttcaggtgaatatgtgtctaaagaatat 267  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  11442707 ttcttgaattcacttcacgtgaatatgtgtctaaagaatat 11442747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 22577135 - 22577364
Alignment:
Q  36 atttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata---- 131  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| | || || |||||| ||||||||||||||||||| ||||| |||||||||        
T  22577135 atttccatatccttaaaatggacaaatgatgtcatctcttcaatagttttgattgtatgtcttatgcaaatgaaatcctttagggactttcatataacca 22577234  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    |||||||||| ||||||||||||||| |||||  ||||||||||||| |||||||| ||||||||||| |||||||||| ||||||| ||||||||||||    
T  22577235 tcactatcaattgagccatacaaataaattgttgcacatctttcatacaatttgagtctttcatgtgccactgaacttattcaagtatgaaaaagttctt 22577334  T
Q  232 gaattcccttcaggtgaatatgtgtctaaa 261  Q
    |||||| |||||| ||||||||| ||||||    
T  22577335 gaattcacttcagttgaatatgtctctaaa 22577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 29544356 - 29544186
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  ||||| |||||||| |||||||||||||||    
T  29544356 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataattttgatagtatgtattacacaaataaaatcctttagggagtttcatata 29544257  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctac 202  Q
    ||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||| |||||||| ||||    
T  29544256 tcactatcaagtgagtcatataaacaaattgtaacacatctttcatataatttgagcatttcatgtactac 29544186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 3617632 - 3617878
Alignment:
Q  11 atcatcaaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaa 109  Q
    ||||| |||| ||||||| || ||||||||| ||||||||||||| |||||||||||||||||||  |||| | || || || ||| | |  ||||||||    
T  3617632 atcataaaattgattataacaaattcatttc-aaatccttaaaatagacaaatgatgtcatctttcaaatagttttgat-gtgtgtctcacacaaatgaa 3617729  T
Q  110 atccttcagggagtttcatatat----cactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactga 205  Q
    ||||||| ||||||||||||||     ||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  3617730 atccttctgggagtttcatataatcaccacaatcaagtgagccatacaaatatattgtagcacatctatcatataatttgagcctttcatgtgctactca 3617829  T
Q  206 acttaatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgt 254  Q
    |||||||| |||| ||||||||| |||||||| ||||||||||||||||    
T  3617830 acttaatccagtatgaaaaagttattgaattcacttcaggtgaatatgt 3617878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 17720982 - 17720763
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||| |||||||||||||||| || ||||| | || ||| | ||| | |  ||||||||||||||||||||||||||||||    
T  17720982 attcatttcgaaatccttaaaattgacaaatgatgtcatccttccaatagttttgataatgtgtgtcacacaaatgaaatccttcagggagtttcatata 17720883  T
Q  132 -tcac---tatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
     ||||   ||||||||||| | |||||||| |||||| ||||||||||||||||||||||| |||||||||| |||||| |||| |||||| |||||| |    
T  17720882 atcaccaatatcaagtgagtcgtacaaataaattgtagcacatctttcatataatttgagcatttcatgtgccactgaaattaaccaagtatgaaaaaat 17720783  T
Q  228 tcttgaattcccttcaggtg 247  Q
    |||||||||| |||||||||    
T  17720782 tcttgaattcacttcaggtg 17720763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 18536107 - 18536230
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| |||||||||||||    
T  18536107 atcactatcatgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttct 18536206  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||| |||||||| |||||||    
T  18536207 tgaattcacttcaggtaaatatgt 18536230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 15715840 - 15715637
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  15715840 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 15715742  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15715741 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 15715660  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  15715659 ggattcacttctggtgaatatgt 15715637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 37360083 - 37360206
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| |||||||||||||    
T  37360083 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttct 37360182  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  37360183 tgaattaacttcaggtaaatatgt 37360206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 31094077 - 31094195
Alignment:
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    ||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| ||||||||||||||    
T  31094077 tcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttctt 31094176  T
Q  232 gaattcccttcaggtgaat 250  Q
    ||| || ||||||||||||    
T  31094177 gaaatcacttcaggtgaat 31094195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 146322 - 146474
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatat- 130  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||  || ||||||||| ||| ||||| |||||| |||| ||||||| ||||     
T  146322 attcatttccaaatctttaaaattgacaaatgatgtcatcttttcaataactttgatagtatgttttacgcaaacgaaatcattcaaggagtttaatata 146421  T
Q  131 ---atcactatcaagtgagccatacaaatatattgtaacacatctttcatata 180  Q
       ||||||||||||| || |||||||||||||| || || ||||||||||||    
T  146422 atcatcactatcaagtaagtcatacaaatatattatagcaaatctttcatata 146474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 33493968 - 33494069
Alignment:
Q  152 caaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaata 251  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||    
T  33493968 caaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaata 33494066  T
Q  252 tgt 254  Q
    |||    
T  33494067 tgt 33494069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 11659225 - 11659102
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||  ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| ||||||||||| |    
T  11659225 atcactatcacgtgattcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagtttt 11659126  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  11659125 tgaatttacttcaggtaaatatgt 11659102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 148 - 252
Target Start/End: Original strand, 27164394 - 27164498
Alignment:
Q  148 catacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtg 247  Q
    |||||||||| ||||||||| ||||||||||||| || |  | ||||| || || |||||||||| ||||||||||||||||||||||||  || |||||    
T  27164394 catacaaatacattgtaacatatctttcatataaattcaatccttcatatgttattgaacttaataaagtaagaaaaagttcttgaattcattttaggtg 27164493  T
Q  248 aatat 252  Q
    |||||    
T  27164494 aatat 27164498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 357
Target Start/End: Complemental strand, 6787294 - 6787199
Alignment:
Q  262 gaatatactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaat 357  Q
    |||||||||||||||||||||||||||||||         ||||| |||||| ||||||||||||||||||||| | |||| |||||||||||||||    
T  6787294 gaatatactccctccgtcccataatataagcaaaaaaaa-ctcattttctttatcccaaaatataagcaaaaaagacaaacttttatcctatttaat 6787199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 4672796 - 4672853
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  4672796 ctcattttctttgtcccaaaatataagcaaaaaagataaatttttatcctatttaatc 4672853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 6785353 - 6785410
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| ||||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  6785353 ctcattttctttgtcacaaaatataagcaaaaaagataaacttttatcctatttaatc 6785410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 7468217 - 7468160
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  7468217 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatc 7468160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 28017008 - 28016951
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  28017008 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatc 28016951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 15959940 - 15959871
Alignment:
Q  265 tatactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa 335  Q
    ||||||||||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||    
T  15959940 tatactccctccgtcccataatataagcaaaaaaaa-ctcattttctttgtcccaaaatataagcaaaaaa 15959871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 6786734 - 6786791
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| | |||| |||||||| |||||||    
T  6786734 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctctttaatc 6786791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 44149096 - 44149039
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| | |||| ||||| ||||||||||    
T  44149096 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaatc 44149039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 49626063 - 49626120
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagc 188  Q
    |||||||||| |||||| ||| ||||| |||||||||||| |||||||||| ||||||    
T  49626063 atcactatcacgtgagcaatataaatacattgtaacacatatttcatataaattgagc 49626120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 16854032 - 16854092
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaaataaacg----tttatcctatttaatc 358  Q
    ||||| ||||||||||||||||||||||||||||| ||||     ||||||||||||||||    
T  16854032 ctcattttctttgtcccaaaatataagcaaaaaaaaaaacaaacttttatcctatttaatc 16854092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 336
Target Start/End: Original strand, 46542878 - 46542912
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaaa 336  Q
    ||||| |||||||||||||||||||||||||||||    
T  46542878 ctcattttctttgtcccaaaatataagcaaaaaaa 46542912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 45226046 - 45226091
Alignment:
Q  314 gtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||    
T  45226046 gtcccataatataagcaaaaaagataaacttttatcctatttaatc 45226091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 43667571 - 43667543
Alignment:
Q  263 aatatactccctccgtcccataatataag 291  Q
    |||||||||||||||||||||||||||||    
T  43667571 aatatactccctccgtcccataatataag 43667543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 44056540 - 44056512
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaaa 336  Q
    |||||||||||||||||||||||||||||    
T  44056540 ttctttgtcccaaaatataagcaaaaaaa 44056512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 94 - 358
Target Start/End: Complemental strand, 20124150 - 20123886
Alignment:
Q  94 gtattatgcaaatgaaatccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttc 193  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20124150 gtattatgcaaatgaaatcctttagggagtttcatatatcactatcaagtgagccatataaatatattgtaacacatctttcatataatttgagcctttc 20124051  T
Q  194 atgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgtgtctaaagaatatactccctccgtcccataatataagcn 293  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  20124050 atgtgctactgaacttaatcaagtacgaaaaagttcttgaattcccttcaggtgaatatgtttctaaagaatatactccctccgtcccataatataagc- 20123952  T
Q  294 nnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
            || || || ||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  20123951 aaaaaaaacttattttatttgtcccaaaatataatcaaaaaagacaaacgtttatcctatttaatc 20123886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 32 - 268
Target Start/End: Complemental strand, 34325540 - 34325304
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||| | |||||  |||| |||||||||||||||| |||||||     
T  34325540 attcatttccatatctttaaaatggacaaatgatgtcatcttttcaataattttgatagtgtctattacacaaacgaaatccttcagggagcttcatatg 34325441  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  34325440 tcactatcaagtgagccatacaaatatattgtagcacatctttcgtataatttgagcctttcatgtgctacttaacttaatcaagtatgaaaaagttctt 34325341  T
Q  232 gaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  34325340 gaattcacttgaggtgaatatgtgtctaaagaatata 34325304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 7562432 - 7562184
Alignment:
Q  11 atcatcaaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaa 109  Q
    ||||| |||||||||||| |  |||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||  ||||||||    
T  7562432 atcataaaatcgattataacgaattcattttcaaatccttaaaatggacaaatgatgtcttcttttcaataattttgatagtatgtattacacaaatgaa 7562333  T
Q  110 atccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaactt 209  Q
    |||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||    
T  7562332 atccttcaaggagtttcatatatcactatccagtgagcaatataaatatattgtagcacatctttcatataatttgagtcttttatgtgctactgaactt 7562233  T
Q  210 aatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgtgtct 258  Q
    ||||||||| |||||| ||||||||||| |||||| |||||||||||||    
T  7562232 aatcaagtatgaaaaaattcttgaattcacttcagttgaatatgtgtct 7562184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 32 - 269
Target Start/End: Original strand, 22477837 - 22478073
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||||||||| || ||||||||| |||  |||||||||||||||||  ||||| |||||    
T  22477837 attcatttccatatccttaaaatggagaaat-atgtcatcttttcaataatcttgatagtatgtcttacacaaatgaaatccttcagatagtttaatata 22477935  T
Q  132 t----cactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
         |||||||||||||||||    |||| |||||| |||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||    
T  22477936 atcaacactatcaagtgagcca----aataaattgtaccacatctttcatataatttgagtctttcatgttctactaaacttaatcaagtatgaaaaagt 22478031  T
Q  228 tcttgaattcccttcaggtgaatatgtgtctaaagaatatac 269  Q
    |||||||||| |||||||||| ||| | |||||| |||||||    
T  22478032 tcttgaattcacttcaggtgagtatttctctaaacaatatac 22478073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 16647641 - 16647438
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  16647641 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 16647543  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16647542 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 16647461  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  16647460 ggattcacttctggtgaatatgt 16647438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 341433 - 341553
Alignment:
Q  134 actatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttga 233  Q
    ||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| ||||||||||||||||    
T  341433 actatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttga 341532  T
Q  234 attcccttcaggtgaatatgt 254  Q
    |||| |||||||| |||||||    
T  341533 attcacttcaggtaaatatgt 341553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 25498271 - 25498068
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || ||||||||| | |  |||||||||||||||| | |||||||||||    
T  25498271 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtatgtttcactcaaatgaaatccttcaagtagtttcatata 25498173  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     || |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  25498172 -----------------attcaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaattatgaaaaagttctt 25498091  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  25498090 ggattcacttctggtgaatatgt 25498068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 32147597 - 32147493
Alignment:
Q  149 atacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtga 248  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||    
T  32147597 atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtga 32147499  T
Q  249 atatgt 254  Q
    ||||||    
T  32147498 atatgt 32147493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 8247132 - 8247009
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| ||||| |||||||||  |||| |||||||||||| |||||||||||||    
T  8247132 atcactatcatgtgagtcatacaactatattgcaacacatctttcatataaattgagtctttcatgtaatactaaacttaatcaagcaagaaaaagttct 8247033  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  8247032 tgaattaacttcaggtaaatatgt 8247009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 571627 - 571830
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  571627 attcatttc-aaatccttaaaatggacgaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 571725  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  571726 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttatt 571807  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  571808 ggattcacttctggtgaatatgt 571830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 17622002 - 17621799
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || ||| || || | |  |||||||||||||||| | |||||||||||    
T  17622002 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatattacgtttcactcaaatgaaatccttcaagtagtttcatata 17621904  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  17621903 -----------------atacaaataaattgtagcatat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttatt 17621822  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  17621821 ggattcacttctggtgaatatgt 17621799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 42208033 - 42207932
Alignment:
Q  152 caaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaata 251  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||| ||||||||    
T  42208033 caaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttattggattcacttctggtgaata 42207935  T
Q  252 tgt 254  Q
    |||    
T  42207934 tgt 42207932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 20124498 - 20124418
Alignment:
Q  17 aaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgta 96  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20124498 aaatcgattataacaaattcatttccaaatccttaaaatggacaaatgatgttatcttttcaataatgttaatagtatgta 20124418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 42163196 - 42163399
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  42163196 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagaagtttcatata 42163294  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||| ||||| |||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||    
T  42163295 -----------------ataaaaataaattgtagcacat-tttcatataatgtgagcctttcatgtgctcctgaacttaatcaactatgaaaaagttctt 42163376  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| ||| |||||||    
T  42163377 ggattcacttctggtaaatatgt 42163399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 26457665 - 26457763
Alignment:
Q  156 tatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgt 254  Q
    ||||||| ||||||| |||||||||| ||||| |||||||||| |||| |||||||||||| |||||||| | |||||| || ||||||||||||||||    
T  26457665 tatattgcaacacatttttcatataaattgagtctttcatgtgatactaaacttaatcaagcaagaaaaattccttgaactcacttcaggtgaatatgt 26457763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 44659843 - 44659746
Alignment:
Q  150 tacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaa 249  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||||||     |||||||||| || ||||||||||||| |||| |||  ||||||    
T  44659843 tacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgct-----acttaatcaaatatgaaaaagttcttggattcgctt-tggtgaa 44659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 44877795 - 44877845
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaaataaacgtttatcctatttaatc 358  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  44877795 ttctttgtcccaaaatataagaaaaaaattaaacttttatcctatttaatc 44877845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 358
Target Start/End: Original strand, 25944435 - 25944530
Alignment:
Q  263 aatatactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||| | |||| |||||| |||||||||    
T  25944435 aatatactccctccgtcccataatataagcaaaaaaaat-tcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaatc 25944530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 252
Target Start/End: Original strand, 25674045 - 25674149
Alignment:
Q  148 catacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtg 247  Q
    ||||||||||| || ||||| ||||||||||||| || || |||||||||| |||| || |||||| || | ||||||||| || ||||  ||||| |||    
T  25674045 catacaaatatgttctaacatatctttcatataaattaagtctttcatgtggtactaaatttaatccagcacgaaaaagtttttaaatttacttcaagtg 25674144  T
Q  248 aatat 252  Q
    |||||    
T  25674145 aatat 25674149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 32147696 - 32147598
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| |||||   || ||| || || | |  |||||||||||||||| | |||||||||||    
T  32147696 attcatttc-aaatccttaaaatggacaaataatgtcatctttccaatagatttgatattacgtttcactcaaatgaaatccttcaagtagtttcatata 32147598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 11806807 - 11806752
Alignment:
Q  303 tcatcttctttgtcccaaaatataagcaaaaaaataaacgtttatcctatttaatc 358  Q
    |||| ||| |||||||||| | |||||||||||| |||| ||||||||||||||||    
T  11806807 tcattttcattgtcccaaagtgtaagcaaaaaaaaaaacttttatcctatttaatc 11806752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 18800965 - 18800932
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa 335  Q
    ||||| ||||||||||||||||||||||||||||    
T  18800965 ctcattttctttgtcccaaaatataagcaaaaaa 18800932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 30082276 - 30082309
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa 335  Q
    ||||| ||||||||||||||||||||||||||||    
T  30082276 ctcattttctttgtcccaaaatataagcaaaaaa 30082309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 47778669 - 47778702
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa 335  Q
    ||||| ||||||||||||||||||||||||||||    
T  47778669 ctcattttctttgtcccaaaatataagcaaaaaa 47778702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 25737853 - 25737825
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaaa 336  Q
    |||||||||||||||||||||||||||||    
T  25737853 ttctttgtcccaaaatataagcaaaaaaa 25737825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 32 - 267
Target Start/End: Original strand, 16444303 - 16444542
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||||||||||||||||| |||||    
T  16444303 attcattttcatatccttaaaatggacaaatgatgtcatcttttcaataactttgatagtatgtcttatgcaaatgaaatccttcagggagtttaatata 16444402  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
        ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16444403 atcatcactatcaagtgagccatacaaatatattgtagcacatcttttatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagt 16444502  T
Q  228 tcttgaattcccttcaggtgaatatgtgtctaaagaatat 267  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  16444503 tcttgaattcacttcaggtgaatatgtgtctaaagaatat 16444542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 11311290 - 11311037
Alignment:
Q  11 atcatcaaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaa 109  Q
    ||||| |||||||||||| |  ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  ||||||||    
T  11311290 atcataaaatcgattataacgaatttatttccaaatccttaaaatggacaaatgatgtcatcttttcaataattttgatagtatgtattacacaaatgaa 11311191  T
Q  110 atccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaactt 209  Q
    ||| |||||| |||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||  ||||||||||||||||||||    
T  11311190 atctttcaggaagtttcatatatcactatcaagagagccatacaaatatattatagcacatctttcatataatttgagtatttcatgtgctactgaactt 11311091  T
Q  210 aatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgtgtctaaaga 263  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  11311090 aatcaagtatgaaaaagatcttgaattcacttcaggtgaatatgtgtctaaaga 11311037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 32 - 268
Target Start/End: Complemental strand, 19088685 - 19088450
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||||||||| || ||||| ||||||| |||| ||||||||||||||||||||||||||    
T  19088685 attcatttccaaattcttaaaatggaaaaatgatgtcatattttcaataattttgatagtttgtattacgcaagtgaaatccttcagggagtttcatata 19088586  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    ||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  19088585 tcactatcaagtgagtcacataaatatattgtagcacatctttcatataatttgagcctttcatgtgctactgaacttaattaagtatgaaaaagttctt 19088486  T
Q  232 gaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    |||||| | ||||||||||||||||||||| ||||||    
T  19088485 gaattcac-tcaggtgaatatgtgtctaaataatata 19088450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 25230022 - 25229784
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  || ||||||||| ||| ||||||||||||||||| ||||||| |||||    
T  25230022 attcatttccatatccttaaaatggacaaatgatgtcatcttttcaataactttgatagtatgtcttacgcaaatgaaatccttcaaggagtttgatata 25229923  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
        |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||    
T  25229922 atcatcactatcaagtgaaccatacaaatatattgtatcacatatttcatataatttgagcattccatgtgctaccgaacttaatcaagtatgaaaaagt 25229823  T
Q  228 tcttgaattcccttcaggtgaatatgtgtctaaagaata 266  Q
    |||||||||| ||||| |||||| |||||||||||||||    
T  25229822 tcttgaattcacttcatgtgaatgtgtgtctaaagaata 25229784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 32 - 267
Target Start/End: Complemental strand, 19911491 - 19911255
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatat- 130  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||  || ||||||||| ||| |||||||||||| |||| ||||||| ||||     
T  19911491 attcatttccatatccttgaaatggacaaatgatgtcatcttttcaataactttgatagtatgtcttacgcaaatgaaatctttcatggagtttaatata 19911392  T
Q  131 ---atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
       |||| |||||||||||||||||||||||||||||   ||||||| |||||||||||||||||||| ||||| |||||||||||||||| | ||||||    
T  19911391 gtcatcattatcaagtgagccatacaaatatattgta--gcatcttttatataatttgagcctttcatttgctaatgaacttaatcaagtatg-aaaagt 19911295  T
Q  228 tcttgaattcccttcaggtgaatatgtgtctaaagaatat 267  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  19911294 tcttgaattcacttcaggtgaatatgtgtctaaagaatat 19911255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 21290409 - 21290635
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||||||||  || ||||||||| |||  |||||||||||||||||||||||| |||||    
T  21290409 attcttttccatatctttaaaatggacaaatgatgtcatcttttcaataactttgatagtatgtcttacacaaatgaaatccttcagggagtttaatata 21290508  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
        |||||||||||| | |||||||||||||||||  |||||||||||||||||||||| |||| |||||||| |||||||||| ||||| ||||||||    
T  21290509 atcatcactatcaagtcatccatacaaatatattgtggcacatctttcatataatttgagtcttttatgtgctattgaacttaattaagtatgaaaaagt 21290608  T
Q  228 tcttgaattcccttcaggtgaatatgt 254  Q
    |||||||||| ||||| ||||||||||    
T  21290609 tcttgaattcacttcaagtgaatatgt 21290635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 32 - 268
Target Start/End: Original strand, 7385753 - 7385976
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||| || | ||||||||||| | |||||||| ||||||||||||||||||||    
T  7385753 attcatttc-aaatccttaaaatggacaaatggtatcatcttttcaataattttgagagtatgtattacgtaaatgaaacccttcagggagtttcatata 7385851  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    ||||||||||||||  |        | |||||| | |||||||||||||||||||| |||||||||||||||||||||||||||  || |||||  ||||    
T  7385852 tcactatcaagtgattc--------acattgtagctcatctttcatataatttgagtctttcatgtgctactgaacttaatcaa--aaaaaaaa--tctt 7385939  T
Q  232 gaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    |||||| ||||  |||||||||| | |||||||||||    
T  7385940 gaattcacttctagtgaatatgtctttaaagaatata 7385976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 635500 - 635297
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  635500 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 635402  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  635401 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 635320  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  635319 ggattcacttctggtgaatatgt 635297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 7910904 - 7911107
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  7910904 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 7911002  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7911003 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 7911084  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  7911085 ggattcacttctggtgaatatgt 7911107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 14898001 - 14897798
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  14898001 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 14897903  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14897902 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 14897821  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  14897820 ggattcacttctggtgaatatgt 14897798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 22429564 - 22429361
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  22429564 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 22429466  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22429465 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 22429384  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  22429383 ggattcacttctggtgaatatgt 22429361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 22435158 - 22434955
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  22435158 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 22435060  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22435059 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 22434978  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  22434977 ggattcacttctggtgaatatgt 22434955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 43288526 - 43288649
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| ||||| |||||| |||||||||||||    
T  43288526 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttcatcaagcaagaaaaagttct 43288625  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||| |||||||| |||||||    
T  43288626 tgaattcacttcaggtaaatatgt 43288649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 1524950 - 1524747
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||| ||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  1524950 attcatttc-aaatccttaaaatggacaaatgatgtcatatttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 1524852  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1524851 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 1524770  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  1524769 ggattcacttctggtgaatatgt 1524747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 43776208 - 43776005
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  43776208 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 43776110  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  43776109 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttatt 43776028  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  43776027 ggattcacttctggtgaatatgt 43776005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 25446196 - 25446319
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| ||||| |||||||||  || | |||||||||||| |||||||||||||    
T  25446196 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagtctttcatgtaatattaaacttaatcaagcaagaaaaagttct 25446295  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  25446296 tgaattaacttcaggtaaatatgt 25446319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 14889791 - 14889709
Alignment:
Q  172 tttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||    
T  14889791 tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgt 14889709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 148 - 252
Target Start/End: Original strand, 19438688 - 19438792
Alignment:
Q  148 catacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtg 247  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| ||||||||||| |||||||  ||||||||     
T  19438688 catacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttattgaattaacttcaggta 19438787  T
Q  248 aatat 252  Q
    |||||    
T  19438788 aatat 19438792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 17320688 - 17320808
Alignment:
Q  134 actatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttga 233  Q
    ||||||| ||||| ||||||||||||||  |||||||||||||| |||  |||| ||||||||||||||| |||||| ||| | ||||||||||||  ||    
T  17320688 actatcatgtgagtcatacaaatatattacaacacatctttcatttaaaatgagtctttcatgtgctactaaacttagtcatgcaagaaaaagttcagga 17320787  T
Q  234 attcccttcaggtgaatatgt 254  Q
    |||| ||||| ||||||||||    
T  17320788 attcacttcaagtgaatatgt 17320808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 33032806 - 33032686
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcat-ataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttc 229  Q
    |||||||||||||||| ||| |||||| |||||| ||||| |||  | |||| || ||| ||||||||| |||| |||||||||||| ||||| ||  ||    
T  33032806 atcactatcaagtgagtcatgcaaatacattgtaccacatatttttttataaattaagcatttcatgtgttactaaacttaatcaagcaagaataaaatc 33032707  T
Q  230 ttgaattcccttcaggtgaat 250  Q
    |||||||| ||||||||||||    
T  33032706 ttgaattcacttcaggtgaat 33032686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 45660223 - 45660316
Alignment:
Q  266 atactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagc-aaaaaaataaacgtttatcctatttaatc 358  Q
    |||||||||| || |||||||||||||         ||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  45660223 atactccctcagttccataatataagcaaaaaaaaactcattttctttgtcccaaaatataagcaaaaaaaacaaacttttatcctatttaatc 45660316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 105422 - 105355
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtg 198  Q
    ||||||||||||||||  | ||||||| |||||||||||| | ||| |||||||||| ||||||||||    
T  105422 atcactatcaagtgagtgacacaaatacattgtaacacatatgtcacataatttgagtctttcatgtg 105355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 358
Target Start/End: Original strand, 19263959 - 19264053
Alignment:
Q  264 atatactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||||||||||| |||||||||||||||         ||||| |||||||||||||||||||||||||||| | |||| |||||| |||||||||    
T  19263959 atatactccctccatcccataatataagcaaaaaaaa-ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaatc 19264053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 25571941 - 25571998
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagc-aaaaaaataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||| ||||||| |||| ||||| ||||||||||    
T  25571941 ctcattttctttgtcccaaaatataagcaaaaaaaacaaacttttattctatttaatc 25571998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 28858206 - 28858263
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||| ||||||||||||||||| | |||| ||||||||||||||||    
T  28858206 ctcattttctttgtcctaaaatataagcaaaaaatacaaacttttatcctatttaatc 28858263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 33198898 - 33198841
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| | |||  ||||||||||||||||    
T  33198898 ctcattttctttgtcccaaaatataagcaaaaaagacaaaattttatcctatttaatc 33198841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 5280738 - 5280687
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||||||||||||| | |||  ||||||||||||||||    
T  5280738 ttctttgtcccaaaatataagcaaaaaagacaaatttttatcctatttaatc 5280687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 11616926 - 11616977
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||| |||||||||| |||||| |||||| ||||||||||||||||    
T  11616926 ttctttgtcctaaaatataagtaaaaaagataaacttttatcctatttaatc 11616977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 44454869 - 44454916
Alignment:
Q  311 tttgtcccaaaatataagcaaaaaaataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||| ||||||| |||| ||||||||| ||||||    
T  44454869 tttgtcccaaaatataagaaaaaaaacaaacttttatcctaattaatc 44454916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 336
Target Start/End: Original strand, 14873857 - 14873891
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaaa 336  Q
    ||||| |||||||||||||||||||||||||||||    
T  14873857 ctcattttctttgtcccaaaatataagcaaaaaaa 14873891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 45085191 - 45085232
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaa-ataaacgtttatc 348  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  45085191 ttctttgtcccaaaatataagcaaaaaagataaacttttatc 45085232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 13823003 - 13822967
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaaata 338  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  13823003 ctcattttctttgtcccaaaatataagtaaaaaaata 13822967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 357
Target Start/End: Complemental strand, 29524304 - 29524248
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaat 357  Q
    ||||| ||||||||||||||||||||| |||||| | |||| ||||| |||||||||    
T  29524304 ctcattttctttgtcccaaaatataagtaaaaaagacaaacttttattctatttaat 29524248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 357
Target Start/End: Original strand, 38070912 - 38070968
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaat 357  Q
    ||||| |||||||||||||| ||||||||||||| | |||| |||||| ||||||||    
T  38070912 ctcattttctttgtcccaaattataagcaaaaaagacaaacttttatcatatttaat 38070968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 13999207 - 13998949
Alignment:
Q  11 atcatcaaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaa 109  Q
    ||||| |||||||||||| |  ||| ||||||||||||||||||||| |||| ||||||||||||| |||||| || ||||||||||||| |||||||||    
T  13999207 atcataaaatcgattataacgaatttatttccaaatccttaaaatgggcaaacgatgtcatctttttaataattttgatagtatgtattacgcaaatgaa 13999108  T
Q  110 atccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaactt 209  Q
    |||||||| |||||||||||||||||||||||||||| |||| |||||||||||  |||||||||||||||||||||| |||||||||||||||||| ||    
T  13999107 atccttcatggagtttcatatatcactatcaagtgagacataaaaatatattgttgcacatctttcatataatttgagtctttcatgtgctactgaattt 13999008  T
Q  210 aatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    ||||||||| |||||||||||||||||  |||||||||||| |||||||||||||||||    
T  13999007 aatcaagtatgaaaaagttcttgaatttacttcaggtgaatgtgtgtctaaagaatata 13998949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 26996404 - 26996168
Alignment:
Q  11 atcatcaaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaa 109  Q
    ||||| |||||||||||| |  ||||||||||||||||| ||||| || |||||||||||| ||||||||||| || ||||| |||||||||||||||||    
T  26996404 atcataaaatcgattataacgaattcatttccaaatcctaaaaatagataaatgatgtcatattttcaataattttgatagtgtgtattatgcaaatgaa 26996305  T
Q  110 atccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaactt 209  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26996304 atccttcagggagtttcatatatcactatcaagtgagtcatataaataaattgtaacacatctttcatataatttgagtctttcatgtgctactgaactt 26996205  T
Q  210 aatcaagtaagaaaaagttcttgaattcccttcaggt 246  Q
    ||||||| | |||||||||||||||||| ||||||||    
T  26996204 aatcaagcatgaaaaagttcttgaattcacttcaggt 26996168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 22748219 - 22747966
Alignment:
Q  11 atcatcaaatcgattatacata-ttcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaa 109  Q
    ||||| |||||||||||| | | || |||| ||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||  ||||||||    
T  22748219 atcataaaatcgattataaagaatttattttcaaatccttaaaatggacaaatgatgtcatcttttcagtaattttgatagtatgtattactcaaatgaa 22748120  T
Q  110 atccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaactt 209  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||| ||||||||||    
T  22748119 atccttcagggagtttcatatatcactatcaagtgagtcatacaaatatattgtagcacatctttcatataatttgagtcttttatgtgttactgaactt 22748020  T
Q  210 aatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    ||||||||| |||||||||||| |     ||||||||||||| ||||||||||||||||    
T  22748019 aatcaagtatgaaaaagttcttca-----cttcaggtgaatacgtgtctaaagaatata 22747966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 32 - 268
Target Start/End: Original strand, 2925106 - 2925342
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||| | | |||||  ||||||||||||||||||||| |||||||     
T  2925106 attcatttccatatctttaaaatggacaaatgatgtcatcttttcaataattttgatattgtctattacacaaatgaaatccttcagggagcttcatatg 2925205  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  2925206 tcactatcaagtgagtcatacaaatatattgtagcacatctttcgtataatttgggcctttcatgtgctacttaacttaatcaagtatgaaaaagttctt 2925305  T
Q  232 gaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    |||||| ||| ||||||||||||||||||| ||||||    
T  2925306 gaattcacttgaggtgaatatgtgtctaaataatata 2925342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 32 - 233
Target Start/End: Original strand, 12747512 - 12747714
Alignment:
Q  32 attcatttccaaatccttaaaatgg-acaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatat 130  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||| || ||||| | |||||  ||||||||||||||||||||| |||||||    
T  12747512 attcatttccatatctttaaaatgggacaaatgatgtcatcttttcaataattttgatagtgtctattacacaaatgaaatccttcagggagcttcatat 12747611  T
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
     ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  12747612 gtcactatcaagtgagccatacaaatatattgtagcacatctttcgtataatttgagtctttcatgtgctacttaacttaatcaagtatgaaaaagttct 12747711  T
Q  231 tga 233  Q
    |||    
T  12747712 tga 12747714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 53528873 - 53528647
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||| | || ||||| ||| | |  |||||||||||||| |||||||||||||||    
T  53528873 attcatttccaaatccttaaaatggacaaatgatgtcacctttccaatagttttgatagtgtgtgtcacacaaatgaaatcctttagggagtttcatata 53528774  T
Q  132 t----cactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
         |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||| ||||||||    
T  53528773 atcaccactatcaagtgagccatgcaaatatattgtagcacatctttcatataatttgagcctttcatatgctgatgaacttaatcaagtatgaaaaagt 53528674  T
Q  228 tcttgaattcccttcaggtgaatatgt 254  Q
    | |||||||| ||||| ||||||||||    
T  53528673 tattgaattcacttcaagtgaatatgt 53528647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 19569737 - 19569508
Alignment:
Q  17 aaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatcctt 115  Q
    |||||||||||| || ||||||||| ||||||| |||||||||||||||||||  |||||||||| | || ||||||||| ||| | |||||||||||||    
T  19569737 aaatcgattataacaaattcatttctaaatcctaaaaatggacaaatgatgtccccttttcaatagttttgatagtatgtcttaggaaaatgaaatcctt 19569638  T
Q  116 cagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaa 215  Q
    |||||||||||    ||||||||||||||| | ||||||||| | |||||||||||| |||||| |||  ||  |||||||| ||| | ||||||| |||    
T  19569637 cagggagtttc----atcactatcaagtgatcaatacaaatacaatgtaacacatctatcatatgattgtagtttttcatgtactattaaacttaaccaa 19569542  T
Q  216 gtaagaaaaagttcttgaattcccttcaggtgaa 249  Q
    | | | |||||||||||||||| | |||||||||    
T  19569541 gaatgcaaaagttcttgaattcacatcaggtgaa 19569508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 25692307 - 25692429
Alignment:
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    ||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| ||||||||||||||    
T  25692307 tcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttctt 25692406  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    ||| || ||||||||||||||||    
T  25692407 gaaatcacttcaggtgaatatgt 25692429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 53981311 - 53981108
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  53981311 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 53981213  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53981212 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 53981131  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  53981130 ggattcacttctggtgaatatgt 53981108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 12660323 - 12660446
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| |||||||||||||    
T  12660323 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttct 12660422  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  12660423 tgaattaacttcaggtaaatatgt 12660446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 20193633 - 20193737
Alignment:
Q  149 atacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtga 248  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||    
T  20193633 atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtga 20193731  T
Q  249 atatgt 254  Q
    ||||||    
T  20193732 atatgt 20193737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 1875132 - 1875255
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| ||||||| |||||    
T  1875132 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaggttct 1875231  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  1875232 tgaattaacttcaggtaaatatgt 1875255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 16326851 - 16326974
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||  ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| |||||||||||||    
T  16326851 atcactatcacgtgagtcatacagctatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttct 16326950  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  16326951 tgaattaacttcaggtaaatatgt 16326974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 30674837 - 30674960
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||| | ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| |||||||||||||    
T  30674837 atcactatcacgtgagtcatacgactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttct 30674936  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  30674937 tgaattaacttcaggtaaatatgt 30674960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 23193109 - 23192986
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||| ||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| ||||| |||||  |||||||||||||    
T  23193109 atcattatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaactttatcaatcaagaaaaagttct 23193010  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||| |||||||| |||||||    
T  23193009 tgaattcacttcaggtaaatatgt 23192986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 17187077 - 17186982
Alignment:
Q  263 aatatactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||| |||||||||||         ||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  17187077 aatatactccctccgtcctataatataagcaaaaaaaa-ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatc 17186982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 26082204 - 26082347
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||| |||||||  ||||| ||| |||||||||||||| | |||||||||||| | | | |||| ||||  ||||     | | || ||    
T  26082204 attcatttctaaatctttaaaattaacaaacgatatcatcttttcaatagttttaatagtatgtctcacgaaaattaaatgtttca-----tataat-ta 26082297  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataa 181  Q
    |||||||||||||||||||||| ||| | |||||||||| ||||||||||    
T  26082298 tcactatcaagtgagccatacagatacactgtaacacatttttcatataa 26082347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 2229135 - 2229206
Alignment:
Q  264 atatactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa 335  Q
    |||||||||||||||||||||||||||||         | ||| ||||||||||||||||||||||||||||    
T  2229135 atatactccctccgtcccataatataagcaaaaaaaaacacattttctttgtcccaaaatataagcaaaaaa 2229206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 20193534 - 20193581
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaata 80  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  20193534 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaata 20193581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 55580527 - 55580595
Alignment:
Q  267 tactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa 335  Q
    |||||||||||||| |||||||||||         ||||| ||||||||||||||||||||||||||||    
T  55580527 tactccctccgtcctataatataagcaaaaaaaaactcattttctttgtcccaaaatataagcaaaaaa 55580595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 10069600 - 10069648
Alignment:
Q  311 tttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  10069600 tttgtcccaaaatataagcaaaaaagaaaaacttttatcctatttaatc 10069648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 357
Target Start/End: Complemental strand, 16605092 - 16605036
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaat 357  Q
    ||||| |||||||||||||||||||||||||||| | |||| ||||| |||||||||    
T  16605092 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatgctatttaat 16605036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 39078016 - 39078107
Alignment:
Q  265 tatactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaa 356  Q
    |||||||||||||||||| |||||||||         ||||| ||||||||||||||||||||| |||||| | |||| ||||||||||||||    
T  39078016 tatactccctccgtcccacaatataagcaaaaaaaa-ctcattttctttgtcccaaaatataagtaaaaaagacaaacttttatcctatttaa 39078107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 4058615 - 4058666
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||||||||||    
T  4058615 ttctttgtcctaaaatataagcaaaaaagacaaacttttatcctatttaatc 4058666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 9397662 - 9397587
Alignment:
Q  176 atataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaata 251  Q
    |||||| |||||||||||||||| || |  ||||||||||||| || || || ||||||||| ||| |||||||||    
T  9397662 atataaattgagcctttcatgtggtagtagacttaatcaagtatgataatgtgcttgaattcactttaggtgaata 9397587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 17794784 - 17794745
Alignment:
Q  319 aaaatataagcaaaaaaataaacgtttatcctatttaatc 358  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  17794784 aaaatataagcaaaaagataaacttttatcctatttaatc 17794745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 35529572 - 35529623
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||||||||||||| | |||| ||||| ||||||||||    
T  35529572 ttctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaatc 35529623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 357
Target Start/End: Original strand, 50145651 - 50145706
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaaataaacgtttatcctatttaat 357  Q
    ||||| |||||||| |||||||||||| ||||||| |||| ||||||| |||||||    
T  50145651 ctcattttctttgttccaaaatataaggaaaaaaaaaaacttttatcccatttaat 50145706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 13754947 - 13755010
Alignment:
Q  108 aaatccttcagggagtttcatata----tcactatcaagtgagccatacaaatatattgtaaca 167  Q
    ||||||||||||||| ||||| ||    ||||||||||||||||||||||| || |||||||||    
T  13754947 aaatccttcagggagcttcatgtaaatgtcactatcaagtgagccatacaagtacattgtaaca 13755010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 26092007 - 26092057
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataa 181  Q
    ||||||| |||||||||||| || ||| |||||||||||| ||||||||||    
T  26092007 atcactaacaagtgagccatgcatatacattgtaacacatttttcatataa 26092057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 25150279 - 25150230
Alignment:
Q  145 agccatacaaatatattgtaacacatctttcatataatttgagcctttca 194  Q
    |||||||||||||  |||||| ||||||||||||||| ||||| ||||||    
T  25150279 agccatacaaatacgttgtaatacatctttcatataaattgagtctttca 25150230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 48793883 - 48793826
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagca-aaaaaataaacgtttatcctatttaatc 358  Q
    ||||| ||||||||||||||||||||||| |||| | |||| ||||| ||||||||||    
T  48793883 ctcattttctttgtcccaaaatataagcataaaagacaaacttttattctatttaatc 48793826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 30245038 - 30245086
Alignment:
Q  311 tttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  30245038 tttgttccaaaatgtaagcaaaaaagacaaacgtttatcctatttaatc 30245086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 46532799 - 46532719
Alignment:
Q  10 catcatcaaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaata 89  Q
    |||||| |||| ||||||| || ||||||||  ||||| ||||||||||||| |||| |||||| ||||||| | ||||||    
T  46532799 catcataaaattgattataacaaattcatttataaatctttaaaatggacaactgatatcatctcttcaatagttttaata 46532719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 32 - 268
Target Start/End: Complemental strand, 122393 - 122157
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||||| | ||||||||||||| ||| |||||||||||    
T  122393 attcattttcaaattcttaaaatggataaatgatgtcatcttttcaataattttgatagtatgtattacgtaaatgaaatcctttaggaagtttcatata 122294  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    ||||||||||||||  |||| ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||    
T  122293 tcactatcaagtgaatcatataaataaattgtaacacatctttcatataatttgagccttttatgtgcaactgaacttagtcaagtatgaaaaagttctt 122194  T
Q  232 gaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    |||||| |||||||||||||||| | |||||||||||    
T  122193 gaattcacttcaggtgaatatgtatttaaagaatata 122157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 37 - 268
Target Start/End: Complemental strand, 23428496 - 23428265
Alignment:
Q  37 tttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatatatcact 136  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||| || ||||| | |||||  ||||| ||||||||||||||| ||||||| |||||    
T  23428496 tttccatatctttaaaatggacaaatgatgtcatcttttcaataattttgatagtgtctattacacaaataaaatccttcagggagcttcatatgtcact 23428397  T
Q  137 atcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaatt 236  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  23428396 atcaagtgagccatacaaatatattgtagcacatatttcgtataagttgagcctttcatgtgctacttaacttaatcaagtatgaaaaagttcttgaatt 23428297  T
Q  237 cccttcaggtgaatatgtgtctaaagaatata 268  Q
    | ||| ||||||||||||||||||||||||||    
T  23428296 cacttgaggtgaatatgtgtctaaagaatata 23428265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 10738209 - 10737965
Alignment:
Q  11 atcatcaaatcgattatac-atattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaa 109  Q
    ||||| ||||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  10738209 atcataaaatcgattataataaattcatttc-aaatccttaaaatggacaaatgatgtcatcttttcaataattttaatagtatatattacgcaaatgaa 10738111  T
Q  110 atccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaactt 209  Q
    | ||||||||||||||||||||||||||||||||||| |        |||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  10738110 acccttcagggagtttcatatatcactatcaagtgagtc--------atattgtagcacatctttcatataatttgagcctttcatgtgctacagaactt 10738019  T
Q  210 aatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    ||||||     |||||||||| |||||| ||| | |||||||||| | |||||||||||    
T  10738018 aatcaa-----aaaaagttctcgaattcactttaagtgaatatgtctttaaagaatata 10737965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 32 - 268
Target Start/End: Original strand, 28349282 - 28349523
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    |||||||| || |||||||||||||||||||||| ||||||||| |||||  || ||||||||| ||| | | ||||||||||||||||| ||| |||||    
T  28349282 attcattttcatatccttaaaatggacaaatgatatcatctttttaataactttgatagtatgtcttacgtatatgaaatccttcagggaatttaatata 28349381  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagccttt-catgtgctactgaacttaatcaagtaagaaaaag 226  Q
        ||||| |||||||| |||||||||||||||||| ||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||    
T  28349382 atcatcactgtcaagtgatccatacaaatatattgtagcacatatttcatataatttaagcattttcatgtgctactgaacttaatcaagtatgaaaaag 28349481  T
Q  227 ttcttgaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  28349482 ttcttgaattcacttcgggtgaatatgtgtctaaagaatata 28349523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 32 - 252
Target Start/End: Complemental strand, 8509184 - 8508965
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatat- 130  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||| || ||||||||| |||  |||||||||||||||||||||||||||||     
T  8509184 attcatttccatatccttaaaatggataaatgatgtcatcttttcaataattttgatagtatgtcttacacaaatgaaatccttcagggagtttcatata 8509085  T
Q  131 ---atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
       ||||||||||||| |||    |||||| ||||||||||||||||| |||||| |||| ||||||||||||||| |||||| ||||||| ||||||||    
T  8509084 atcatcactatcaagtcagc----caaataaattgtaacacatctttc-tataatgtgagtctttcatgtgctactaaacttattcaagtatgaaaaagt 8508990  T
Q  228 tcttgaattcccttcaggtgaatat 252  Q
    |||||||||| ||||||||||||||    
T  8508989 tcttgaattcgcttcaggtgaatat 8508965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 32 - 252
Target Start/End: Complemental strand, 17909050 - 17908822
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| || ||||||||||||||||||||  |||| ||||||| | || || |||||| ||| |||||||||||||||| ||||||| ||||||    
T  17909050 attcatttccatattcttaaaatggacaaatgatgctatctcttcaatagttttgattgtatgtcttacgcaaatgaaatccttcggggagttacatata 17908951  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgc----tactgaacttaatcaagtaagaaa 223  Q
        |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||    ||||||||||||||||||| ||||    
T  17908950 actatcactatcaagtgagccataaaaataaattgtaacacatctttcatataatttgagcattttatgtgctacgtactgaacttaatcaagtatgaaa 17908851  T
Q  224 aagttcttgaattcccttcaggtgaatat 252  Q
    |||||||||||||| ||||||||||||||    
T  17908850 aagttcttgaattcacttcaggtgaatat 17908822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 30723132 - 30723254
Alignment:
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    ||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| ||||||||||||||    
T  30723132 tcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttctt 30723231  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    ||| || ||||||||||||||||    
T  30723232 gaaatcacttcaggtgaatatgt 30723254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 30715353 - 30715476
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| |||||||||||||    
T  30715353 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttct 30715452  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  30715453 tgaattaacttcaggtaaatatgt 30715476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 29542435 - 29542314
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||| | ||||||| ||||||| || |||| |||||||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||    
T  29542435 atcactatcatgtgggtcatacaactatattgcaatacatttttcatataaattgagtctttcatgtgatactaaacttaatcaagtaagaaaaagttct 29542336  T
Q  231 tgaattcccttcaggtgaatat 252  Q
    |||||||  |||||||||||||    
T  29542335 tgaattcatttcaggtgaatat 29542314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 13143659 - 13143716
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  13143659 ctcattttctttgtcccaaaatataagcaaaaaagataaacttttatcctaattaatc 13143716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 358
Target Start/End: Complemental strand, 34890474 - 34890382
Alignment:
Q  266 atactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||||||||||||         ||||| |||||||||||||||||||||||||||| | |||| |||||| |||||||||    
T  34890474 atactccctccgtcccataatataagcaaaaaaaa-ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaatc 34890382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 28348513 - 28348563
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaaataaacgtttatcctatttaatc 358  Q
    ||||||||||||||||||||| ||||| | |||| ||||||||||||||||    
T  28348513 ttctttgtcccaaaatataagaaaaaagacaaacttttatcctatttaatc 28348563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 4047159 - 4047102
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| | |||| ||||| ||||||||||    
T  4047159 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaatc 4047102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 24892733 - 24892790
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||| ||||||||||||||||||| | |||| ||||||||||||||||    
T  24892733 ctcattttctttgttccaaaatataagcaaaaaagacaaacttttatcctatttaatc 24892790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 35525493 - 35525550
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| ||||||||||||||||||||| |||||| | |||| ||||||||||||||||    
T  35525493 ctcattttctttgtcccaaaatataagtaaaaaagacaaacttttatcctatttaatc 35525550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 36190666 - 36190723
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| | | || ||||||||||||||||    
T  36190666 ctcattttctttgtcccaaaatataagcaaaaaagacacacttttatcctatttaatc 36190723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 357
Target Start/End: Complemental strand, 13144226 - 13144170
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaat 357  Q
    ||||| ||||||||| |||||||||||||||||| | |||| |||||||||||||||    
T  13144226 ctcattttctttgtctcaaaatataagcaaaaaagacaaacttttatcctatttaat 13144170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 29920535 - 29920479
Alignment:
Q  303 tcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||| ||||||||||| |||||||||||||||| | |||| ||||||||||||||||    
T  29920535 tcattttctttgtccctaaatataagcaaaaaacacaaacttttatcctatttaatc 29920479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 30576086 - 30576035
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||||||||||||| | |||  ||||||||||||||||    
T  30576086 ttctttgtcccaaaatataagcaaaaaagacaaatttttatcctatttaatc 30576035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 8107884 - 8107850
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaaa 336  Q
    ||||| |||||||||||||||||||||||||||||    
T  8107884 ctcattttctttgtcccaaaatataagcaaaaaaa 8107850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 33563769 - 33563719
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaa-aataaacgtttatcctatttaat 357  Q
    |||||||||||||| ||||||||||||  |||||| |||||||||||||||    
T  33563769 ttctttgtcccaaattataagcaaaaatgataaacttttatcctatttaat 33563719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 16846659 - 16846731
Alignment:
Q  11 atcatcaaatcgattata-catattcatttccaaatccttaaaatggac--aaatgatgtcatcttttcaata 80  Q
    ||||| ||||||| |||| || ||||||||| |||||||||||||||||  |||||||||||| | |||||||    
T  16846659 atcataaaatcgactatatcaaattcatttctaaatccttaaaatggacaaaaatgatgtcatgtcttcaata 16846731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 336
Target Start/End: Complemental strand, 43216619 - 43216586
Alignment:
Q  303 tcatcttctttgtcccaaaatataagcaaaaaaa 336  Q
    |||| |||||||||||||||||||||||||||||    
T  43216619 tcattttctttgtcccaaaatataagcaaaaaaa 43216586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 374250 - 374198
Alignment:
Q  307 cttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||||| ||||||||| ||||||||||| | ||| |||||||||||||||||    
T  374250 cttctttctcccaaaatgtaagcaaaaaagacaaatgtttatcctatttaatc 374198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 41086615 - 41086587
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaaa 336  Q
    |||||||||||||||||||||||||||||    
T  41086615 ttctttgtcccaaaatataagcaaaaaaa 41086587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 19442027 - 19442263
Alignment:
Q  11 atcatcaaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaa 109  Q
    ||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  19442027 atcataaaatcgattataacaaattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataattttcatagtatgtattatgcaaatgaa 19442126  T
Q  110 atccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaactt 209  Q
    ||||||||||||||||||||||||||||||||||||| | || ||| | || |||||||||||||||||||||||||||||||||||| ||||||||| |    
T  19442127 atccttcagggagtttcatatatcactatcaagtgagtcgtataaacaaatggtaacacatctttcatataatttgagcctttcatgtactactgaacct 19442226  T
Q  210 aatcaagtaagaaaaagttcttgaattcccttcaggtgaatat 252  Q
    |||||      ||||||||||||||||| ||||| ||||||||    
T  19442227 aatca------aaaaagttcttgaattcacttcaagtgaatat 19442263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 32 - 268
Target Start/End: Original strand, 17271038 - 17271278
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| || |||||||||||||||||||||||||| ||||||| | || || |||||  ||| |||||||||||||||| ||||||||||||||    
T  17271038 attcatttccatattcttaaaatggacaaatgatgtcatctcttcaatagttttgatggtatggcttacgcaaatgaaatccttcggggagtttcatata 17271137  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
        |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17271138 accatcactatcaagtgaaccatacaaataaattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagt 17271237  T
Q  228 tcttgaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    |||||||||| ||||| |||||||| | | |||||||||||    
T  17271238 tcttgaattcacttcaagtgaatatttctttaaagaatata 17271278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 87 - 269
Target Start/End: Original strand, 14461647 - 14461829
Alignment:
Q  87 atagtatgtattatgcaaatgaaatccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttga 186  Q
    ||||||||||||| |||||| |||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  14461647 atagtatgtattaggcaaattaaatccatcagg-agtttcatatattaatatcaagtgagccatacaaatatattgtagcacgtgtttcatataatttga 14461745  T
Q  187 gcctttcatgtgctactgaacttaatcaagtaagaaaaag-ttcttgaattcccttcaggtgaatatgtgtctaaagaatatac 269  Q
    | |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||| ||||    
T  14461746 gtctttcatgtgctactgaacttaatcaagtatgaaaaagattcttgaattcacttcaggtgtatatgtgtctaaagaaaatac 14461829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 6932251 - 6932028
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| | ||||||||||||||||||||||||||  | ||||||| | ||  | || ||| ||| ||| ||||||||||||||| |||||||||||    
T  6932251 attcatttcaatatccttaaaatggacaaatgatgtcacatcttcaatagttttgtttgtgtgtcttacgcagatgaaatccttcaggaagtttcatata 6932152  T
Q  132 ----tcactatcaagtgagccata--caaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaa 225  Q
        || |||||||||||||||||  |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6932151 accatctctatcaagtgagccatatacaaataaattgtaacacatatttaatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaa 6932052  T
Q  226 gttcttgaattcccttcaggtgaa 249  Q
    |||||||||||| ||| |||||||    
T  6932051 gttcttgaattcactttaggtgaa 6932028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 25394949 - 25394783
Alignment:
Q  11 atcatcaaatcgattata-catattcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaa 109  Q
    ||||| |||||||||||| |  ||| |||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||  ||||||||    
T  25394949 atcataaaatcgattataacgaatttatttccaaatccttaaaatggacaaatgatatcatcttttcaataattttgatagtatatattactcaaatgaa 25394850  T
Q  110 atccttcagggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttca 176  Q
    |||||||  ||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  25394849 atccttctaggaatttcatatatcactatcaagtgagtcatacaaatatattgtagcacatctttca 25394783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 14851860 - 14851657
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| |||||||||||||||||||||||||||||||||  ||||   || ||| ||||| | |  |||||||||||||||| | |||||||||||    
T  14851860 attcatttc-aaatccttaaaatggacaaatgatgtcatctttctaatagatttgatattatgtttcactcaaatgaaatccttcaagtagtttcatata 14851762  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  14851761 -----------------atacaaataaattgtagcacattttt-atataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttatt 14851680  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  14851679 ggattcacttctggtgaatatgt 14851657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 6412074 - 6412184
Alignment:
Q  134 actatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaag-aaaaagttcttg 232  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||||| |||| |||||  |||| |||| || ||||||||| ||| ||||||||||||    
T  6412074 actatcacgtgagccatacaactatattgcaacacatctttcatataaattgaccctttgttgtgatactaaatttaatcaagcaagaaaaaagttcttg 6412173  T
Q  233 aattcccttca 243  Q
    ||||| |||||    
T  6412174 aattcacttca 6412184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 19558025 - 19558104
Alignment:
Q  172 tttcatataatttgagcctttcatgtgctactgaacttaatcaagtaag-aaaaagttcttgaattcccttcaggtgaat 250  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| | ||||| || ||||||||  |||||||||||    
T  19558025 tttcatataatttgagtctttcatgtgctactgaacttaatcaagtatgaaaaaaattgttgaattcatttcaggtgaat 19558104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 34267112 - 34267226
Alignment:
Q  140 aagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattccc 239  Q
    ||||||| |||||||||| |||||||||||||||||||| ||  ||   |||| |||||||||| |||||||||||  || ||||| |||||||| || |    
T  34267112 aagtgagtcatacaaatacattgtaacacatctttcatacaaagtggatcttttatgtgctactaaacttaatcaaccaataaaaatttcttgaactcac 34267211  T
Q  240 ttcaggtgaatatgt 254  Q
    |||| ||||| ||||    
T  34267212 ttcaagtgaaaatgt 34267226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 216
Target Start/End: Original strand, 19817596 - 19817767
Alignment:
Q  43 aatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatat----atcactat 138  Q
    |||| |||| |||||||||||||||||||| |  |||||| |||||||||||| | | | || | |||||||||| ||| ||| ||||    ||||||||    
T  19817596 aatctttaagatggacaaatgatgtcatctctctaataattttaatagtatgtctcacgaaacttaaatccttcaaggaattttatataagcatcactat 19817695  T
Q  139 caagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaag 216  Q
    |||||||| |||||      |||||||||||| |||||||||| || ||||| | ||| |||||| | | ||||||||    
T  19817696 caagtgagtcatac------attgtaacacatatttcatataaattaagcctcttatgcgctactaagcataatcaag 19817767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 5300836 - 5300782
Alignment:
Q  303 tcatcttctttgtcccaaaatataagcaaaaaaataaacgtttatcctatttaat 357  Q
    |||| |||||||||||||| |||||||||||| || ||| |||||| ||||||||    
T  5300836 tcattttctttgtcccaaattataagcaaaaagatcaacttttatcatatttaat 5300782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 32 - 267
Target Start/End: Complemental strand, 19149 - 18910
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| ||||||||| |||||||||||||||||||| |||||||  || ||||||||| ||| |||||||||||||||||| |||||| |||||    
T  19149 attcatttccatatccttaaactggacaaatgatgtcatcttgtcaataactttgatagtatgtcttacgcaaatgaaatccttcagagagtttgatata 19050  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
        ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  19049 atcatcactatcaagtgagccatacaaatatattgtagcacattttttatataatttgagcctttcatgtgctactaaacttaatcaagtatgaaaaagt 18950  T
Q  228 tcttgaattcccttcaggtgaatatgtgtctaaagaatat 267  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  18949 tcttgaattcacttcaggtgaaaatgtgtctaaagaatat 18910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 32 - 267
Target Start/End: Complemental strand, 29317 - 29078
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| ||||||||| |||||||||||||||||||| |||||||  || ||||||||| ||| |||||||||||||||||| |||||| |||||    
T  29317 attcatttccatatccttaaactggacaaatgatgtcatcttgtcaataactttgatagtatgtcttacgcaaatgaaatccttcagagagtttgatata 29218  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
        ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  29217 atcatcactatcaagtgagccatacaaatatattgtagcacattttttatataatttgagcctttcatgtgctactaaacttaatcaagtatgaaaaagt 29118  T
Q  228 tcttgaattcccttcaggtgaatatgtgtctaaagaatat 267  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  29117 tcttgaattcacttcaggtgaaaatgtgtctaaagaatat 29078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 32 - 267
Target Start/End: Complemental strand, 39306 - 39067
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| ||  |||||||||||||||||||||||||| |||||||  || ||||||||| ||| |||||||||||||||||| |||||| |||||    
T  39306 attcatttccatatatttaaaatggacaaatgatgtcatcttgtcaataactttgatagtatgtcttacgcaaatgaaatccttcagagagtttgatata 39207  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
        ||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39206 atcatcactatcaagtgagtcatacaaatatattgtagcacattttttatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagt 39107  T
Q  228 tcttgaattcccttcaggtgaatatgtgtctaaagaatat 267  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  39106 tcttgaattcacttcaggtgaaaatgtgtctaaagaatat 39067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 32 - 268
Target Start/End: Original strand, 18080801 - 18081037
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||| | |||||  |||||||||| |||||||||| |||||||     
T  18080801 attcatttccatatctttaaaatggacaaatgatgtcatcttttcaataattttgatagtgtctattacacaaatgaaattcttcagggagcttcatatg 18080900  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    ||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||| || |||||||||||||| ||||||||| ||    
T  18080901 tcactatcaagtgagccatacaaatatattgtagcatatctttcgtataatttgagcatttcatgtgctgcttaacttaatcaagtatgaaaaagttttt 18081000  T
Q  232 gaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    |||||| ||| ||||| ||||||||||||||||||||    
T  18081001 gaattcacttgaggtggatatgtgtctaaagaatata 18081037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 121 - 268
Target Start/End: Original strand, 24224206 - 24224353
Alignment:
Q  121 agtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaag 220  Q
    |||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |    
T  24224206 agtttcatatatcactattaagtgagtcatataaataaattgtaacacatctttcatataatttaagcatttcatgtgctaatgaacttaatcaagtatg 24224305  T
Q  221 aaaaagttcttgaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    ||||||||||| ||||| |||||||||||||||| | |||||||||||    
T  24224306 aaaaagttcttaaattcacttcaggtgaatatgtctttaaagaatata 24224353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 96 - 268
Target Start/End: Complemental strand, 17943776 - 17943599
Alignment:
Q  96 attatgcaaatgaaatccttcagggagtttcatatatc-----actatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcct 190  Q
    |||| |||||||||||| ||| || ||||||||||| |     |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  17943776 attacgcaaatgaaatcattcgggaagtttcatataaccatcaactatcaagtgagccatacaaataaattgtaacacatctttcatataatttgagcat 17943677  T
Q  191 ttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    |||||||||||| |||||||||||| || ||||||||| |||||||| |||||||||||||| | | |||||||||||    
T  17943676 ttcatgtgctaccgaacttaatcaactatgaaaaagtttttgaattcacttcaggtgaatatttctttaaagaatata 17943599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 16672529 - 16672406
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| |||||||||||||    
T  16672529 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttct 16672430  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  16672429 tgaattaacttcaggtaaatatgt 16672406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 35265678 - 35265801
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| ||||||| |||||    
T  35265678 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtagtactaaacttaatcaagcaagaaaaggttct 35265777  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  35265778 tgaattaacttcaggtaaatatgt 35265801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 1532607 - 1532810
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||   || |||||| || |    |||||||||||||||| | |||||||||||    
T  1532607 attcatttc-aaatccttaaaatggacaaatgatgtcatattttcaatagatttgatagtacgtttccctcaaatgaaatccttcaagtagtttcatata 1532705  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  1532706 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatatgctactgaacttaatcaagtatgaaaaagttctt 1532787  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  1532788 ggattcacttctggtgaatatgt 1532810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 24214232 - 24214325
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagttt 125  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||  ||||||||||||||| ||||||||    
T  24214232 attcatttccaaatccttaaaatagacaaatgatgtcatcttttcaataatcttgatagtatgtattactcaaatgaaatccttcggggagttt 24214325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 28368022 - 28368126
Alignment:
Q  149 atacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtga 248  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||| |||||    
T  28368022 atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttattggattcgcttctggtga 28368120  T
Q  249 atatgt 254  Q
    ||||||    
T  28368121 atatgt 28368126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 254
Target Start/End: Original strand, 30958473 - 30958668
Alignment:
Q  41 caaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatatatcactatca 140  Q
    |||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||             
T  30958473 caaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata--------- 30958563  T
Q  141 agtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattccct 240  Q
            ||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||    
T  30958564 --------atacaaataaattgtagcacat-tttcatataatttaagcctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcact 30958654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 21172323 - 21172446
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| || ||||||||||||  |||| |||||||||||| ||||||||||| |    
T  21172323 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaatttagcctttcatgtaatactaaacttaatcaagcaagaaaaagttat 21172422  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  21172423 tgaattaacttcaggtaaatatgt 21172446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 23054529 - 23054635
Alignment:
Q  148 catacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtg 247  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| |||||||||||||||||||  ||||||||     
T  23054529 catacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattaacttcaggta 23054628  T
Q  248 aatatgt 254  Q
    |||||||    
T  23054629 aatatgt 23054635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 29948797 - 29948735
Alignment:
Q  117 agggagtttcatatatcactatcaagtgagccatacaaatatattgtaacacatctttcatat 179  Q
    |||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||    
T  29948797 agggagtttcatatttcactatcaagtgagccatatatataaattgtaacacatctttcatat 29948735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 42273546 - 42273603
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  42273546 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatc 42273603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 28367924 - 28367971
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaata 80  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  28367924 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaata 28367971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 29948736 - 29948696
Alignment:
Q  105 atgaaatccttcagggagtttcatatatcactatcaagtga 145  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  29948736 atgaaatccttcagggagtttcatatttcactatcaagtga 29948696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 358
Target Start/End: Original strand, 8225326 - 8225417
Alignment:
Q  267 tactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||| | |||| |||||| |||||||||    
T  8225326 tactccctccgtcccataatataagcaaaaaaaat-tcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcatatttaatc 8225417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 9957680 - 9957623
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||||||||||| | |||| |||||| |||||||||    
T  9957680 ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaatc 9957623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 17945058 - 17945010
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaata 80  Q
    ||||||||||| || ||||||||| |||||||||||||||| |||||||    
T  17945058 attcatttccatattcttaaaatgaacaaatgatgtcatctcttcaata 17945010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 358
Target Start/End: Original strand, 20643877 - 20643968
Alignment:
Q  267 tactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||||||||||||||||||||||||         ||||| |||||| ||||||||||||||||||||| | |||| |||||| |||||||||    
T  20643877 tactccctccgtcccataatataagcaaaaaaaa-ctcattttctttatcccaaaatataagcaaaaaagacaaacttttatcttatttaatc 20643968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 12730251 - 12730196
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaa 356  Q
    ||||| ||||||||||||||||||||| |||||| | |||| ||||||||||||||    
T  12730251 ctcattttctttgtcccaaaatataagtaaaaaagacaaacttttatcctatttaa 12730196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 12793071 - 12793016
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaa 356  Q
    ||||| |||||||| ||||||||||||||||||| | |||| ||||||||||||||    
T  12793071 ctcattttctttgttccaaaatataagcaaaaaatacaaacttttatcctatttaa 12793016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 338
Target Start/End: Complemental strand, 2002361 - 2002331
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaaata 338  Q
    |||||||||||||||||||||||||||||||    
T  2002361 ttctttgtcccaaaatataagcaaaaaaata 2002331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 842793 - 842752
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaa-ataaacgtttatc 348  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  842793 ttctttgtcccaaaatataagcaaaaaagataaacttttatc 842752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 358
Target Start/End: Original strand, 32110864 - 32110956
Alignment:
Q  267 tactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||||||||| |          |||| |||||| ||| ||||||||||||||||| | |||| ||||||||||||||||    
T  32110864 tactccctccgtcccataatataaacaaaaaaaaaatcattttctttatcctaaaatataagcaaaaaagacaaacatttatcctatttaatc 32110956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 29948820 - 29948868
Alignment:
Q  220 gaaaaagttcttgaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    |||||||||||||||||| |||| ||||||||| | | |||||||||||    
T  29948820 gaaaaagttcttgaattcacttctggtgaatatatctgtaaagaatata 29948868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 357
Target Start/End: Original strand, 34425227 - 34425283
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaat 357  Q
    ||||| |||||||||| ||||||||||||||||| | |||| ||||||| |||||||    
T  34425227 ctcattttctttgtcctaaaatataagcaaaaaagacaaacttttatcccatttaat 34425283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 37522860 - 37522832
Alignment:
Q  264 atatactccctccgtcccataatataagc 292  Q
    |||||||||||||||||||||||||||||    
T  37522860 atatactccctccgtcccataatataagc 37522832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 38130379 - 38130323
Alignment:
Q  303 tcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||| ||||||||||||||||||||| |||||| |||||  ||||| ||||||||||    
T  38130379 tcattttctttgtcccaaaatataagtaaaaaagataaatttttattctatttaatc 38130323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 39505495 - 39505463
Alignment:
Q  303 tcatcttctttgtcccaaaatataagcaaaaaa 335  Q
    |||| ||||||||||||||||||||||||||||    
T  39505495 tcattttctttgtcccaaaatataagcaaaaaa 39505463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 32 - 268
Target Start/End: Complemental strand, 11129 - 10899
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||| |||||  |||||||||||||| |||||||||||||||    
T  11129 attcattttcaaatccttaaaatggataaatgatgtcatcttttcaataattttgatagtatatattacacaaatgaaatcctttagggagtttcatata 11030  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
    ||||||||||||||| |||| ||| | |||||||||||||||||||||||||||| | |||||||  ||||||||||||||||      |||||||||||    
T  11029 tcactatcaagtgagtcatataaacacattgtaacacatctttcatataatttgaccatttcatgcactactgaacttaatca------aaaaagttctt 10936  T
Q  232 gaattcccttcaggtgaatatgtgtctaaagaatata 268  Q
    |||||| |||||| ||||||| | | |||||||||||    
T  10935 gaattcacttcagttgaatatttctttaaagaatata 10899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 32 - 261
Target Start/End: Complemental strand, 17032333 - 17032101
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||||||  | || || | | ||| ||||| |||||||||||| ||||||||||||    
T  17032333 attcatttccatatcattaaaatggacaaatgatgtcatctcttcaataattgtgattgtgtatcttacgcaaacgaaatccttcagtgagtttcatata 17032234  T
Q  132 ----tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagt 227  Q
        ||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  17032233 accatcactatcaagtgagccatacaaataacttgtaacacatctttcatataatttgagtctttcatgtgctactaaacttaatcaagtatgaaaaagt 17032134  T
Q  228 tcttgaattcccttcaggtgaatatgtgtctaaa 261  Q
    |||||||||| | |||| ||||||||| ||||||    
T  17032133 tcttgaattcac-tcagttgaatatgtctctaaa 17032101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 63 - 268
Target Start/End: Original strand, 44122824 - 44123028
Alignment:
Q  63 gatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatatatcactatcaagtgagccatacaaatatattg 162  Q
    |||| ||||||||||||||| || || || ||||||||||||||||||| |||||||  ||||||||||||||||||||||||| |||| ||||| ||||    
T  44122824 gatgacatcttttcaataattttgatggtttgtattatgcaaatgaaattcttcaggaggtttcatatatcactatcaagtgagtcatataaataaattg 44122923  T
Q  163 taacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaatatgtgtctaaag 262  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||| ||| | | | |||||    
T  44122924 taacacatctttcatataatttgagcctttcatgttcta-tgaacttaatcaagtatgaaaaagttcttgaattcacttcaggtaaatttatctttaaag 44123022  T
Q  263 aatata 268  Q
    ||||||    
T  44123023 aatata 44123028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 13925733 - 13925570
Alignment:
Q  44 atccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatat----atcactatc 139  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||| ||| |||||| |||||||||||||||||| ||||    |||||||||    
T  13925733 atccttaaaatggacaaatgatgtcatcttttcaataactttgatagtatgtcttacgcaaataaaatccttcagggagtttaatataatcatcactatc 13925634  T
Q  140 aagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctact 203  Q
    | ||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  13925633 aggtgggccatacaaatatattttaacacatcttttatataatttgagcctttcatgtgctact 13925570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 13925570 - 13925453
Alignment:
Q  150 tacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaa 249  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  13925570 tacaaatatattgtaacacatcttttatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaatttcttgaattcacttcaggtgaa 13925471  T
Q  250 tatgtgtctaaagaatat 267  Q
    ||||||||||||||||||    
T  13925470 tatgtgtctaaagaatat 13925453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 136 - 267
Target Start/End: Complemental strand, 10936233 - 10936102
Alignment:
Q  136 tatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaat 235  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  10936233 tatcaagtaagccatataaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagtacttgaat 10936134  T
Q  236 tcccttcaggtgaatatgtgtctaaagaatat 267  Q
    || |||||| ||||||||| | ||||||||||    
T  10936133 tcacttcagatgaatatgtctttaaagaatat 10936102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 9725625 - 9725828
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  9725625 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 9725723  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9725724 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 9725805  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  9725806 ggattcacttctggtgaatatgt 9725828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 23343594 - 23343391
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  23343594 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 23343496  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23343495 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 23343414  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  23343413 ggattcacttctggtgaatatgt 23343391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 2169691 - 2169795
Alignment:
Q  149 atacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtga 248  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||    
T  2169691 atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtga 2169789  T
Q  249 atatgt 254  Q
    ||||||    
T  2169790 atatgt 2169795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 21882443 - 21882331
Alignment:
Q  134 actatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttga 233  Q
    ||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| ||||||||||||||||    
T  21882443 actatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttga 21882344  T
Q  234 attcccttcaggt 246  Q
    |||| ||||||||    
T  21882343 attcacttcaggt 21882331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 49487861 - 49487981
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| ||||||||| |||||  |||| |||||||||||| |||||||||||||    
T  49487861 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagccttccatgtaatactaaacttaatcaagcaagaaaaagttct 49487960  T
Q  231 tgaattcccttcaggtgaata 251  Q
    ||||||| |||||||| ||||    
T  49487961 tgaattcacttcaggtaaata 49487981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 15753632 - 15753755
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||| | |||||||||||||    
T  15753632 atcactatcacgtgagtcatacaattatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcatgcaagaaaaagttct 15753731  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  15753732 tgaattaacttcaggtaaatatgt 15753755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 13990050 - 13989847
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| | |||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  13990050 attcatttc-aaatccttaaaatggacaaatgatgtcatctttcctatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 13989952  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  13989951 -----------------atacaaataaattgtagcacat-tttcatataatttgagtctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 13989870  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  13989869 ggattcacttctggtgaatatgt 13989847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 13981666 - 13981767
Alignment:
Q  152 caaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttcttgaattcccttcaggtgaata 251  Q
    |||||| |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |||| ||||||||    
T  13981666 caaataaattgtagcacat-tttcatataatttgagcctttcatgtgctattgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaata 13981764  T
Q  252 tgt 254  Q
    |||    
T  13981765 tgt 13981767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 6074947 - 6075040
Alignment:
Q  266 atactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||||||||||||         ||||| ||| |||||||||||||||||||||||| | |||| ||||||||||||||||    
T  6074947 atactccctccgtcccataatataagcaaaaaaaaactcattttcattgtcccaaaatataagcaaaaaagacaaacatttatcctatttaatc 6075040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 20453747 - 20453623
Alignment:
Q  135 ctatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaag-----aaaaagttc 229  Q
    |||||| ||||| ||| |||||| |||| | |||||||||||||||| |||||  ||||||||| |||| |||||||| ||  |||     |||||||||    
T  20453747 ctatcacgtgagtcatgcaaatacattgcagcacatctttcatataaattgagtgtttcatgtgttactaaacttaattaatcaagcaaaaaaaaagttc 20453648  T
Q  230 ttgaattcccttcaggtgaatatgt 254  Q
    |||||||| ||||| ||||||||||    
T  20453647 ttgaattcacttcaagtgaatatgt 20453623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 13981564 - 13981662
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||| ||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  13981564 attcatttc-aaatccttaaaatggacaaatgatgtcatatttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 13981662  T

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Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 26830054 - 26829971
Alignment:
Q  48 ttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||| | | | |||| |||||||||  |||||| ||||||    
T  26830054 ttaaaatggacaaatgatgtcatctcttcaatagttttaatagtatgtctaacggaaattaaatccttcgaggagttccatata 26829971  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 358
Target Start/End: Complemental strand, 14752466 - 14752374
Alignment:
Q  266 atactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||||||||||||         ||||| |||||||||||||||||||||||||||| | |||| |||||| |||||||||    
T  14752466 atactccctccgtcccataatataagcaaaaaaaa-ctcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaatc 14752374  T

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Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 6437944 - 6438038
Alignment:
Q  266 atactccctccgtcccataatataagcnnnnnnnnnctcatcttctttgtcccaaaatataagc--aaaaaaataaacgtttatcctatttaatc 358  Q
    |||||| ||| ||||||||||||||||         ||||| ||||||||||||||||||||||  ||||||| |||| ||||||||||||||||    
T  6437944 atactctctctgtcccataatataagcaaaaaaaaactcattttctttgtcccaaaatataagcaaaaaaaaacaaacttttatcctatttaatc 6438038  T

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Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 52933600 - 52933652
Alignment:
Q  134 actatcaagtgagccatacaaatatattgtaacacatctttcatataatttga 186  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  52933600 actatcaagtgagccataaaaatacattgtaacagatctttcatataaattga 52933652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 2169592 - 2169690
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||| ||| |||||   || ||||||  | | |  |||||||||||||||| | |||||||||||    
T  2169592 attcatttc-aaatccttaaaatggacaaatgatgtcatatttccaatagatttgatagtacatttcactcaaatgaaatccttcaagtagtttcatata 2169690  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 9263910 - 9263964
Alignment:
Q  305 atcttctttgtcccaaaatataagc-aaaaaaataaacgtttatcctatttaatc 358  Q
    ||||| ||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  9263910 atcttttttgtcccaaaatataagcaaaaaaaataaatttttatcctatttaatc 9263964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 52554629 - 52554486
Alignment:
Q  48 ttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaa-tgaaatccttcagggagtttcatata----tcactatcaag 142  Q
    |||||||||| |||||||||||| |  ||| || | || ||||||||||||||  ||| | |||| ||||| | |||||||||||    ||||| ||||     
T  52554629 ttaaaatggataaatgatgtcatttcatcattagtttttatagtatgtattataaaaaattaaatacttcatgaagtttcatataatcatcactgtcaaa 52554530  T
Q  143 tgagccatacaaatatattgtaacacatctttcatataatttga 186  Q
    ||||||||| ||||| ||||||  ||||||||||||||| ||||    
T  52554529 tgagccataaaaatacattgtagtacatctttcatataaattga 52554486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 7866706 - 7866649
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||||||||||||| ||||||| | |||| ||||||||||||||||    
T  7866706 ctcattttctttgtcccaaaatataaacaaaaaagacaaacttttatcctatttaatc 7866649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 28875307 - 28875364
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| ||| |||||||||||||||||||||||| |||||| |||||| |||||||||    
T  28875307 ctcattttcattgtcccaaaatataagcaaaaaatataaacttttatcttatttaatc 28875364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 358
Target Start/End: Original strand, 37074860 - 37074916
Alignment:
Q  303 tcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||| ||||||||||| |||||||||||||||| | |||| ||||||||||||||||    
T  37074860 tcattttctttgtcccgaaatataagcaaaaaagacaaacttttatcctatttaatc 37074916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 46711881 - 46711825
Alignment:
Q  303 tcatcttctttgtcccaaaatataagca-aaaaaataaacgtttatcctatttaatc 358  Q
    |||| ||||||||| ||||||||||||| |||||| |||| ||||||||||||||||    
T  46711881 tcattttctttgtctcaaaatataagcataaaaaacaaacttttatcctatttaatc 46711825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 50651259 - 50651203
Alignment:
Q  303 tcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||| |||||||| |||| |||||||||||||| |||||| ||||||||||||||||    
T  50651259 tcattttctttgttccaatatataagcaaaaaagataaacttttatcctatttaatc 50651203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Original strand, 32070161 - 32070215
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaaataaacgtttatcctatttaa 356  Q
    ||||| |||||| ||||||| |||||||||||| |||||| |||||| |||||||    
T  32070161 ctcattttctttctcccaaattataagcaaaaagataaacttttatcatatttaa 32070215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 54465114 - 54465057
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||| |||||||||| ||||||||||||||||| |||||  |||||| |||||||||    
T  54465114 ctcattttctttgtcctaaaatataagcaaaaaagataaatttttatcttatttaatc 54465057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 21529873 - 21529845
Alignment:
Q  264 atatactccctccgtcccataatataagc 292  Q
    |||||||||||||||||||||||||||||    
T  21529873 atatactccctccgtcccataatataagc 21529845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 31836862 - 31836910
Alignment:
Q  311 tttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    ||||||||||||| ||||||||||| | |||| ||||||||||||||||    
T  31836862 tttgtcccaaaatgtaagcaaaaaatacaaacttttatcctatttaatc 31836910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 357
Target Start/End: Original strand, 38401294 - 38401350
Alignment:
Q  302 ctcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaat 357  Q
    ||||| |||||||||||||| ||||||||||||| || ||| |||||| ||||||||    
T  38401294 ctcattttctttgtcccaaattataagcaaaaaagatcaacttttatcatatttaat 38401350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 50730016 - 50730064
Alignment:
Q  311 tttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||| |||||| |||||  ||||||||||||||||    
T  50730016 tttgtcccaaaatataagtaaaaaagataaatttttatcctatttaatc 50730064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 50782836 - 50782788
Alignment:
Q  311 tttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||| |||||| |||||  ||||||||||||||||    
T  50782836 tttgtcccaaaatataagtaaaaaagataaatttttatcctatttaatc 50782788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 346614 - 346817
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||||| || | |  |||||||||||||||| | |||||||||||    
T  346614 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagtacgtttcactcaaatgaaatccttcaagtagtttcatata 346712  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  346713 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 346794  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||| |||||||||||    
T  346795 ggattcacttctggtgaatatgt 346817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 110897 - 110774
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| |||||||||||||    
T  110897 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttct 110798  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    ||||||  |||||||| |||||||    
T  110797 tgaattaacttcaggtaaatatgt 110774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 11074 - 10952
Alignment:
Q  131 atcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttct 230  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||  |||| |||||||||||| ||| |||||||||    
T  11074 atcactatcacgtgagtcatacaactatattgcaacacatctttcatataaattgagcctttcatgttatactaaacttaatcaagcaag-aaaagttct 10976  T
Q  231 tgaattcccttcaggtgaatatgt 254  Q
    |||||||  |||||||||||||||    
T  10975 tgaattcatttcaggtgaatatgt 10952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 13530 - 13733
Alignment:
Q  32 attcatttccaaatccttaaaatggacaaatgatgtcatcttttcaataatgttaatagtatgtattatgcaaatgaaatccttcagggagtttcatata 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||   || |||| | || | |  |||||||||||||||| | |||||||||||    
T  13530 attcatttc-aaatccttaaaatggacaaatgatgtcatctttccaatagatttgatagcacgtttcactcaaatgaaatccttcaagaagtttcatata 13628  T
Q  132 tcactatcaagtgagccatacaaatatattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaagtaagaaaaagttctt 231  Q
                     ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13629 -----------------atacaaataaattgtagcacat-tttcatataatttgagcctttcatgtgctactgaacttaatcaagtatgaaaaagttctt 13710  T
Q  232 gaattcccttcaggtgaatatgt 254  Q
    | |||| |||  |||||||||||    
T  13711 ggattcacttatggtgaatatgt 13733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 358
Target Start/End: Original strand, 910 - 966
Alignment:
Q  303 tcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  910 tcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatc 966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 358
Target Start/End: Original strand, 8870 - 8926
Alignment:
Q  303 tcatcttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  8870 tcattttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaatc 8926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 157697 - 157748
Alignment:
Q  308 ttctttgtcccaaaatataagcaaaaaa-ataaacgtttatcctatttaatc 358  Q
    |||||||||||||||||||||||||||| | |||| ||||| ||||||||||    
T  157697 ttctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaatc 157748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 3656 - 3614
Alignment:
Q  307 cttctttgtcccaaaatataagcaaaaaa-ataaacgtttatc 348  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  3656 cttctttgtcccaaaatataagcaaaaaagataaacttttatc 3614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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