View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_low_2 (Length: 616)
Name: NF21413_low_2
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 4e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 32266200 - 32266026
Alignment:
| Q |
3 |
aaatgaagaaatctatgagaatggtagcaaatgtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgtt |
102 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266200 |
aaataaagaaatctatgagaatggtagcaaaagtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgtt |
32266101 |
T |
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| Q |
103 |
gagagtgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
177 |
Q |
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| T |
32266100 |
gagagtgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
32266026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 386 - 535
Target Start/End: Complemental strand, 32265826 - 32265677
Alignment:
| Q |
386 |
ttccttgtttgattgatctcaatctacctgctcctgttgatgaataagggaaatggcttaatgggttatcttggtttttacttttacatcattttttgaa |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265826 |
ttccttgtttgattgatctcaatctacctgctcctgttgatgaataagggaaatggcttaatgggttatcttggtttttacttttacatcattttttgaa |
32265727 |
T |
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| Q |
486 |
gcatcttcttctattgaggtacattgatgaatatcttgaattttaagaat |
535 |
Q |
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| T |
32265726 |
gcatcttcttctattgaggtacattgatgaatatcttgaattttaagaat |
32265677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 32265956 - 32265846
Alignment:
| Q |
247 |
tatgaatgtccaatttgttataaaattttcaggtcaggacaagcattaggaggacataaaagatcacattttgttggaggatctgaagagaacacttttg |
346 |
Q |
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| T |
32265956 |
tatgaatgtccaatttgctacaaaattttcaggtcaggacaagcattaggaggacataaaagatcacattttgttggaggatctgaagagaacacttttg |
32265857 |
T |
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| Q |
347 |
tgatcaaacaa |
357 |
Q |
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||||||||||| |
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| T |
32265856 |
tgatcaaacaa |
32265846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 597
Target Start/End: Complemental strand, 32265654 - 32265612
Alignment:
| Q |
555 |
ttggcattatcacatatgatgaaagcatttgcaatgtacagaa |
597 |
Q |
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| T |
32265654 |
ttggcattatcacatatgatgaaagcatttgcaatgtacagaa |
32265612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 248 - 350
Target Start/End: Complemental strand, 19300482 - 19300380
Alignment:
| Q |
248 |
atgaatgtccaatttgttataaaattttcaggtcaggacaagcattaggaggacataaaagatcacattttgttggaggatctgaagagaacacttttgt |
347 |
Q |
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|||||||||||||||| | || ||||||| |||||||||||| ||||| || || |||||||| |||||| |||||||| ||| || |||||| |||| |
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| T |
19300482 |
atgaatgtccaatttgcaacaagattttcaagtcaggacaagctttagggggtcacaaaagatcccattttattggaggaaatgatgataacactcttgt |
19300383 |
T |
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| Q |
348 |
gat |
350 |
Q |
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||| |
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|
| T |
19300382 |
gat |
19300380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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