View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21413_low_22 (Length: 368)

Name: NF21413_low_22
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21413_low_22
NF21413_low_22
[»] chr4 (5 HSPs)
chr4 (19-204)||(50070248-50070433)
chr4 (19-152)||(50078703-50078836)
chr4 (197-361)||(50069856-50070016)
chr4 (224-361)||(50075872-50075995)
chr4 (181-225)||(50078660-50078704)
[»] chr6 (2 HSPs)
chr6 (19-152)||(10797113-10797246)
chr6 (181-225)||(10797070-10797114)
[»] chr2 (5 HSPs)
chr2 (59-130)||(13501504-13501575)
chr2 (59-130)||(13515307-13515378)
chr2 (84-124)||(13541874-13541914)
chr2 (59-124)||(13485788-13485853)
chr2 (59-124)||(13509549-13509614)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 50070433 - 50070248
Alignment:
Q  19 caaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50070433 caaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcct 50070334  T
Q  119 aattacaactaatccatcctccaatttaccaagtctagctactatcatcactaaacatgaccgtgcttgctagttgtttttgtgtc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||  || |||||||||| | ||||||||    
T  50070333 aattacaactaatccatcctccaatttaccaagtctagctactatcatcagtgaacatgagtgttcttgctagttttctttgtgtc 50070248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 50078836 - 50078703
Alignment:
Q  19 caaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50078836 caaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcct 50078737  T
Q  119 aattacaactaatccatcctccaatttaccaagt 152  Q
    ||||||||||||||||||||||||||||||||||    
T  50078736 aattacaactaatccatcctccaatttaccaagt 50078703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 197 - 361
Target Start/End: Complemental strand, 50070016 - 50069856
Alignment:
Q  197 tttgtgtcttcttaatcttccaatgtaatcctccaacttaccaagccttcctactatcgtcattaaacatgagtgtgcttcccagtttgttgttgttttc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||||||||||    
T  50070016 tttgtgtcttcttaatcttccaatgtaatcctccaacttaccaagccttcctactatcgtca----acatgagtgtgcttcccaatttgttgttgttttc 50069921  T
Q  297 ttaatttaagttagcttaatttctgttgaaataaagtgttcacttgttaatttctccctttgcta 361  Q
    ||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||| |||||||    
T  50069920 ttaatttaagttagcttaatttccgttaaaataaattgatcacttgttaatttctccttttgcta 50069856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 361
Target Start/End: Complemental strand, 50075995 - 50075872
Alignment:
Q  224 atcctccaacttaccaagccttcctactatcgtcattaaacatgagtgtgcttcccagtttgttgttgttttcttaatttaagttagcttaatttctgtt 323  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||              ||    
T  50075995 atcctccaacttaccaagccttcctactatcgtcattaaaaatgagtgtgcttgtcagtttgttgttgttttcttaatttaagt--------------tt 50075910  T
Q  324 gaaataaagtgttcacttgttaatttctccctttgcta 361  Q
    |||||||||||||||||||||||||||||| |||||||    
T  50075909 gaaataaagtgttcacttgttaatttctccttttgcta 50075872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 50078704 - 50078660
Alignment:
Q  181 gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50078704 gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat 50078660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 10797246 - 10797113
Alignment:
Q  19 caaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10797246 caaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcct 10797147  T
Q  119 aattacaactaatccatcctccaatttaccaagt 152  Q
    ||||||||||||||||||||||||||||||||||    
T  10797146 aattacaactaatccatcctccaatttaccaagt 10797113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 10797114 - 10797070
Alignment:
Q  181 gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10797114 gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat 10797070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 13501504 - 13501575
Alignment:
Q  59 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa 130  Q
    |||||||| |||||||||| ||||||||||||| ||||||||||   |||||| |||||| |||||||||||    
T  13501504 ggcaaagctaagggtgatggtcttttcaaggcccttgagggttactgtttggctaatcctgattacaactaa 13501575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 13515307 - 13515378
Alignment:
Q  59 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa 130  Q
    |||||||| |||||||||| |||||||||||| || ||||||||   |||||| |||||| |||||||||||    
T  13515307 ggcaaagctaagggtgatggtcttttcaaggctatagagggttactgtttggctaatcctgattacaactaa 13515378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 13541874 - 13541914
Alignment:
Q  84 tcaaggccattgagggttatgttttggccaatcctaattac 124  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  13541874 tcaaggccattgagggttatgttttggcaaaccctaattac 13541914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 13485788 - 13485853
Alignment:
Q  59 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac 124  Q
    |||||||| | |||||||| ||||||||||||  |||| ||||| |||||||| |||||| |||||    
T  13485788 ggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctgattac 13485853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 13509549 - 13509614
Alignment:
Q  59 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac 124  Q
    |||||||| | |||||||| ||||||||| ||  |||| |||||||||||||| |||||| |||||    
T  13509549 ggcaaagctaggggtgatggtcttttcaaagctcttgaaggttatgttttggcaaatcctgattac 13509614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University