View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_low_3 (Length: 558)
Name: NF21413_low_3
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 542
Target Start/End: Original strand, 39643905 - 39644453
Alignment:
| Q |
14 |
gcagcacagaggagtcacgttttatcggagaactggaagatgggaatcacatatctggttcgtgcactttgtgttcattttactattttagcctttctcg |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39643905 |
gcagtacagaggagtcacgttttatcggagaactggaagatgggaatcacatatctggttcgtgcacttcgtgttcattttactattttagcctttctcg |
39644004 |
T |
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| Q |
114 |
tannnnnnnactcgcaccggatcatataaaatgtctctgcattttatcatcgt---------------tatggtggaaagtgattataatttttgtgaga |
198 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |
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| T |
39644005 |
tatttttttactcgcaccggatcatataaaatgtctctgcattttatcatcttagttgtacttactcttatggtggaaagtggttataatttttgtgaga |
39644104 |
T |
|
| Q |
199 |
attttgaatttggatagttgaataatatctaacttgttttatttggtggttgtattttgtannnnnnnnnnnnnnna-----atgtagggattgtgggaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
39644105 |
attttgaatttggatagttgaataatatctaacttgttttatttggtggttgtgttttgtattttttaatttttttttttttatgtagggattgtgggaa |
39644204 |
T |
|
| Q |
294 |
gcaagtttatttaggtaatgaatttgtattttgattaatttcatttcatttatgttgaagtatttattatatgcttctttgctatttttggaaagtttta |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39644205 |
gcaagtttatttaggtaatgaatttgtattttgattaatttcatttcatttatgttgaagtatttattatatgcttctttgctatttttggaaagtttta |
39644304 |
T |
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| Q |
394 |
tgaaatttgtatttgggcttgtaggtggatttgacacggctcatgctgctgctaggtaaaatttctgcacaaatttaatattatgctttcattgacttta |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
39644305 |
tgaaatttgtatttgggcttgtaggtggatttgacacggctcatgctgctgctaggtaaaatttctgcacaaatttaataatttgctttcattgacttta |
39644404 |
T |
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| Q |
494 |
agatattaagatagtgatttgattatagatcattgacttggaatttttt |
542 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39644405 |
agatattaagatagtgatttgattatagatcattgacttggaatttttt |
39644453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 453
Target Start/End: Complemental strand, 21890977 - 21890936
Alignment:
| Q |
412 |
ttgtaggtggatttgacacggctcatgctgctgctaggtaaa |
453 |
Q |
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| T |
21890977 |
ttgtaggtggatttgacacagctcatgctgctgctaggtaaa |
21890936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 46007709 - 46007750
Alignment:
| Q |
412 |
ttgtaggtggatttgacacggctcatgctgctgctaggtaaa |
453 |
Q |
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| T |
46007709 |
ttgtaggtggatttgacacagttcatgctgctgctaggtaaa |
46007750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 453
Target Start/End: Complemental strand, 22616911 - 22616870
Alignment:
| Q |
412 |
ttgtaggtggatttgacacggctcatgctgctgctaggtaaa |
453 |
Q |
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| T |
22616911 |
ttgtaggtggatttgacacagctcatgctgctgctaggtaaa |
22616870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 22617283 - 22617226
Alignment:
| Q |
19 |
acagaggagtcacgttttatcggagaactggaagatgggaatcacatatctggttcgt |
76 |
Q |
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||||||| || ||||||||||| || ||||| ||||||||||| |||||||||||||| |
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| T |
22617283 |
acagaggtgttacgttttatcgcaggactggtagatgggaatcgcatatctggttcgt |
22617226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 22617076 - 22617043
Alignment:
| Q |
277 |
tgtagggattgtgggaagcaagtttatttaggta |
310 |
Q |
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| T |
22617076 |
tgtagggattgtgggaaacaagtttatttaggta |
22617043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 41049413 - 41049454
Alignment:
| Q |
412 |
ttgtaggtggatttgacacggctcatgctgctgctaggtaaa |
453 |
Q |
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| T |
41049413 |
ttgtaggtggatttgacacagctcatgctgctgctaggtaaa |
41049454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 13621384 - 13621426
Alignment:
| Q |
412 |
ttgtaggtggatttgacacggctcatg-ctgctgctaggtaaa |
453 |
Q |
| |
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||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
13621384 |
ttgtaggtggatttgacacagctcatgcctgctgctaggtaaa |
13621426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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