View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_low_30 (Length: 289)
Name: NF21413_low_30
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 26790367 - 26790635
Alignment:
| Q |
1 |
gttgagtaaataaagaccttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttaggaaccacaacctcaggtac |
100 |
Q |
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| T |
26790367 |
gttgagtaaataaagaccttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttagggaccacaacctcaggaac |
26790466 |
T |
|
| Q |
101 |
cataacagttgcaggtaacaatatgcaatagaacacaaatgtgtgtatatggaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttc |
200 |
Q |
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| T |
26790467 |
cataacagttgcaggtaacaatatgcaatagaacacaaatgtgtgtacgtgcaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttc |
26790566 |
T |
|
| Q |
201 |
ttcaacaaagacactttctgcaatggtaaaattaaacaagcacattgatgaattcatataataaattat |
269 |
Q |
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| T |
26790567 |
ttcaacaaagacactttctgcaatggtaaaattaaacaagcacattgatgaattcatataataaattat |
26790635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 26817077 - 26817330
Alignment:
| Q |
1 |
gttgagtaaataaagaccttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttaggaaccacaacctcaggtac |
100 |
Q |
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| T |
26817077 |
gttgagtaaataaagaccttggtgttccaacagcttttagaagggtgatgatggaagggacataaacagttccccatttagggaccacaatctcaggcac |
26817176 |
T |
|
| Q |
101 |
cataacagttgcaggtaacaatatgcaatagaacacaaatgtgtgtatatggaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttc |
200 |
Q |
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| T |
26817177 |
cataacagttgcaggtaacagaacgcaatagaacacaaatgtgtgtatgtgcaccacaatcttttgaacaaagaaaaaattgcaaacaatatataacttc |
26817276 |
T |
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| Q |
201 |
ttcaacaaagacactttctgcaatggtaaaattaaacaagcacattgatgaatt |
254 |
Q |
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| T |
26817277 |
ttccacaaagacactttctgcaatagacatattaaacaaggacatgcatgaatt |
26817330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 26830735 - 26830944
Alignment:
| Q |
16 |
accttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttaggaaccacaacctcaggtaccataacagttgcagg |
115 |
Q |
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| T |
26830735 |
accttggagttccaacagcatttaaaagggtgatgatggaagggatataaacagctccccatttagggaccacaacctcaggtaccataacagttgcagg |
26830834 |
T |
|
| Q |
116 |
taacaatatgcaatagaacacaaatgtgtgtatatggaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaagacact |
215 |
Q |
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| T |
26830835 |
taacacaatgcaatagaaaacaaatgtgttgatgtgggccacaatcttccgaacaaagaaaaaactgtaaacaacatatatcttcttccacaaagacact |
26830934 |
T |
|
| Q |
216 |
ttctgcaatg |
225 |
Q |
| |
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|||||||||| |
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| T |
26830935 |
ttctgcaatg |
26830944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 26784010 - 26784219
Alignment:
| Q |
12 |
aaagaccttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttaggaaccacaacctcaggtaccataacagttg |
111 |
Q |
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||||||||||||| | |||| || || || ||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||| |
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| T |
26784010 |
aaagaccttggtgctgcaaccgcgtttaggagggtgatgatggtagggatataaacagttccccatttagggaccacaatctcaggcaccataacagttg |
26784109 |
T |
|
| Q |
112 |
caggtaacaatatgcaatagaacacaaatgtgtgtatatggaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaaga |
211 |
Q |
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||||||||| |||||||| ||||||||||||| ||| || ||||||||||| || | |||||||||||||||||| |||| | |||||| ||||||| |
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| T |
26784110 |
caggtaacacaatgcaatataacacaaatgtgtttatgtgaaccacaatcttccggacaaagaaaaaactgtaaaccatatatgttttcttccacaaaga |
26784209 |
T |
|
| Q |
212 |
cactttctgc |
221 |
Q |
| |
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|||||||||| |
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| T |
26784210 |
cactttctgc |
26784219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 41920591 - 41920374
Alignment:
| Q |
8 |
aaataaagaccttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttaggaaccacaacctcaggtaccataaca |
107 |
Q |
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||||||| ||||||| |||||||| || |||||||| ||||| | ||||| | |||||||| ||||||||| || || |||| |||||||||| ||| |
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| T |
41920591 |
aaataaacaccttggagttccaactgcattaagaagagtgataactgaaggaatataaacagctccccattttgggactgcaacttcaggtaccaaaact |
41920492 |
T |
|
| Q |
108 |
gttgcaggtaacaatatgcaatagaacacaaatgtgtgtatatggaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaaca |
207 |
Q |
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|||||||||| | |||||||| |||||||| || | || || | | | || |||| |||||| |||||||||| | ||||| ||||||| ||| |
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| T |
41920491 |
gttgcaggtagaacaatgcaataaaacacaaacgtattgatgtgtgctatcactttccgaacaaagaagaaactgtaaattacatgtatcttcttccaca |
41920392 |
T |
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| Q |
208 |
aagacactttctgcaatg |
225 |
Q |
| |
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| T |
41920391 |
aggacactttctgcaatg |
41920374 |
T |
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